Naftali Kaminski, MD
he/him/his
Pulmonology & Sleep Medicine
Biography
Naftali Kaminski, MD, chief of Yale Medicine Pulmonary, Critical Care and Sleep Medicine, is a leader in improving the understanding and treatment of chronic lung diseases. He has a particular interest in idiopathic pulmonary fibrosis, a disease characterized by progressive scarring of the lungs, and in chronic obstructive pulmonary disease and asthma.
Dr. Kaminski leads the Kaminski Lab at Yale School of Medicine, where researchers apply cutting-edge technologies that measure changes in the sequence, expression or regulation of all the genes in the human genome in efforts to learn more about the roles of genome networks and biomarkers in chronic lung disease.
“Pulmonary fibrosis was an understudied and poorly understood disease, with high mortality and morbidity,” says Dr. Kaminiski, who is a professor of medicine (pulmonary) at Yale School of Medicine “I thought that by shifting the focus to human
relevant pathways and mechanisms we can have an impact, and we have.”
Titles
- Boehringer Ingelheim Pharmaceuticals, Inc. Professor of Medicine (Pulmonary)
- Section Chief, Pulmonary, Critical Care & Sleep Medicine
Education & Training
- MDHebrew University (1989)
- BMHebrew University (1985)
Languages Spoken
- English
- עברית (Hebrew)
- ייִדיש (Yiddish)
Additional Information
Honors & Recognitions
- J. Burns Amberson Honorary Award Lecture : American Thoracic Society (2022)
- Blavatnic Fund Innovation Award: (2019)
- Andy Tager Excellence in Mentorship Award: The American Thoracic Society Respiratory Cell and Molecular Biology Assembly (2018)
- Fellow: American Thoracic Society (2018)
- Fellow: European Respiratory Society (2016)
- Gold Medal for Interstitial Lung Disease: European Respiratory Society (2016)
- Member of the Association of American Physicians: (2015)
- Helmholtz International Fellow Award: Helmholtz Institute (2013)
- Recognition for Scientific Achievement: American Thoracic Society (2013)
- Innovator Award: University Of Pittsburgh (2012)
Professional Service
- Yale School of Medicine Diversity Supplement Working Group (2021 - Present): Member
- American Thoracic Society Physician Scientist Forum (2019): Chair
- American Thoracic Society Workshop on Single Cell (2019): Co-Chair
- LungAging Consortium (2019 - Present): Committee Member
- Boehringer-Ingelheim Discovery Award (2019 - Present): Scientific Committee
- Three Lake Partners (2019 - Present): Chair of Scientific Advisory Committee
- Time Banking System Steering Committee (2018 - Present): Member
- Yale School of Medicine Admissions Committee (2018 - Present): Member
- American Thoracic Society (2018 - Present): Fellow
- Yale School of Medicine Faculty Engagement Committee (2017 - 2019): Member
Publications
- Chioccioli M, Roy S, Newell R, Pestano L, Dickinson B, Rigby K, Herazo-Maya J, Jenkins G, Ian S, Saini G, Johnson SR, Braybrooke R, Yu G, Sauler M, Ahangari F, Ding S, DeIuliis J, Aurelien N, Montgomery RL, Kaminski N. A lung targeted miR-29 mimic as a therapy for pulmonary fibrosis. EBioMedicine 2022, 85: 104304. PMID: 36265417, PMCID: PMC9587275, DOI: 10.1016/j.ebiom.2022.104304.
- Schupp JC, Adams TS, Cosme C, Raredon MSB, Yuan Y, Omote N, Poli S, Chioccioli M, Rose KA, Manning EP, Sauler M, DeIuliis G, Ahangari F, Neumark N, Habermann AC, Gutierrez AJ, Bui LT, Lafyatis R, Pierce RW, Meyer KB, Nawijn MC, Teichmann SA, Banovich NE, Kropski JA, Niklason LE, Pe’er D, Yan X, Homer RJ, Rosas IO, Kaminski N. Integrated Single-Cell Atlas of Endothelial Cells of the Human Lung. Circulation 2021, 144: 286-302. PMID: 34030460, PMCID: PMC8300155, DOI: 10.1161/circulationaha.120.052318.
- Yu G, Tzouvelekis A, Wang R, Herazo-Maya JD, Ibarra GH, Srivastava A, de Castro JPW, DeIuliis G, Ahangari F, Woolard T, Aurelien N, Arrojo e Drigo R, Gan Y, Graham M, Liu X, Homer RJ, Scanlan TS, Mannam P, Lee PJ, Herzog EL, Bianco AC, Kaminski N. Thyroid hormone inhibits lung fibrosis in mice by improving epithelial mitochondrial function. Nature Medicine 2017, 24: 39-49. PMID: 29200204, PMCID: PMC5760280, DOI: 10.1038/nm.4447.
- Ahangari F, Price N, Malik S, Chioccioli M, Bärnthaler T, Adams T, Kim J, Pradeep S, Ding S, Cosme C, Rose K, McDonough J, Aurelien N, Ibarra G, Omote N, Schupp J, DeIuliis G, Nunez J, Sharma L, Ryu C, Dela Cruz C, Liu X, Prasse A, Rosas I, Bahal R, Fernandez-Hernando C, Kaminski N. microRNA-33 deficiency in macrophages enhances autophagy, improves mitochondrial homeostasis, and protects against lung fibrosis. JCI Insight 2023, 8: e158100. PMID: 36626225, PMCID: PMC9977502, DOI: 10.1172/jci.insight.158100.
- Adams TS, Schupp JC, Poli S, Ayaub EA, Neumark N, Ahangari F, Chu SG, Raby BA, DeIuliis G, Januszyk M, Duan Q, Arnett HA, Siddiqui A, Washko GR, Homer R, Yan X, Rosas IO, Kaminski N. Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis. Science Advances 2020, 6: eaba1983. PMID: 32832599, PMCID: PMC7439502, DOI: 10.1126/sciadv.aba1983.
- Zhao A, Unterman A, Abu Hussein N, Sharma P, Nikola F, Flint J, Yan X, Adams T, Justet A, Sumida T, Zhao J, Schupp J, Raredon M, Ahangari F, Deluliis G, Zhang Y, Buendia-Roldan I, Adegunsoye A, Sperling A, Prasse A, Ryu C, Herzog E, Selman M, Pardo A, Kaminski N. Single-Cell Analysis Reveals Novel Immune Perturbations in Fibrotic Hypersensitivity Pneumonitis. American Journal Of Respiratory And Critical Care Medicine 2024, 210: 1252-1266. PMID: 38924775, PMCID: PMC11568434, DOI: 10.1164/rccm.202401-0078oc.
- Zuo F, Kaminski N, Eugui E, Allard J, Yakhini Z, Ben-Dor A, Lollini L, Morris D, Kim Y, DeLustro B, Sheppard D, Pardo A, Selman M, Heller RA. Gene expression analysis reveals matrilysin as a key regulator of pulmonary fibrosis in mice and humans. Proceedings Of The National Academy Of Sciences Of The United States Of America 2002, 99: 6292-6297. PMID: 11983918, PMCID: PMC122942, DOI: 10.1073/pnas.092134099.
- Rosas IO, Richards TJ, Konishi K, Zhang Y, Gibson K, Lokshin AE, Lindell KO, Cisneros J, MacDonald SD, Pardo A, Sciurba F, Dauber J, Selman M, Gochuico BR, Kaminski N. MMP1 and MMP7 as Potential Peripheral Blood Biomarkers in Idiopathic Pulmonary Fibrosis. PLOS Medicine 2008, 5: e93. PMID: 18447576, PMCID: PMC2346504, DOI: 10.1371/journal.pmed.0050093.
- Pandit KV, Corcoran D, Yousef H, Yarlagadda M, Tzouvelekis A, Gibson KF, Konishi K, Yousem SA, Singh M, Handley D, Richards T, Selman M, Watkins SC, Pardo A, Ben-Yehudah A, Bouros D, Eickelberg O, Ray P, Benos PV, Kaminski N. Inhibition and Role of let-7d in Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2010, 182: 220-229. PMID: 20395557, PMCID: PMC2913236, DOI: 10.1164/rccm.200911-1698oc.
- Kurbanov D, Ahangari F, Adams T, De Man R, Tang J, Carlon M, Abu Hussein N, Cortesi E, Zapata M, De Sadelaar L, Wuyts W, Vanaudenaerde B, Kaminski N, McDonough J. Epigenetic age acceleration in idiopathic pulmonary fibrosis revealed by DNA methylation clocks. American Journal Of Physiology - Lung Cellular And Molecular Physiology 2025, 328: l456-l462. PMID: 39970931, DOI: 10.1152/ajplung.00171.2024.
- Carter H, Costa R, Adams T, Gilchrist T, Emch C, Bame M, Oldham J, Huang S, Linderholm A, Noth I, Kaminski N, Moore B, Gurczynski S. CD103+ dendritic cell — fibroblast crosstalk via TLR9, TDO2, and AHR signaling drives lung fibrogenesis. JCI Insight 2025, 10 PMID: 39964756, PMCID: PMC11949071, DOI: 10.1172/jci.insight.177072.
- De Man R, Adams T, McDonough J, Cala-Garcia J, Moss B, Yan X, Rosas I, Kaminski N. SINGLE-CELL ANALYSIS OF SOMATIC MUTATIONS IN HUMAN LUNG REVEALS ASSOCIATION WITH TRANSCRIPTIONAL CHANGES IN AGING. Innovation In Aging 2024, 8: 571-572. PMCID: PMC11690935, DOI: 10.1093/geroni/igae098.1872.
- Song Q, Singh A, McDonough J, Adams T, Vos R, De Man R, Myers G, Ceulemans L, Vanaudenaerde B, Wuyts W, Yan X, Schupp J, Hagood J, Kaminski N, Bar-Joseph Z. Predicting lung aging using scRNA-Seq data. PLOS Computational Biology 2024, 20: e1012632. PMID: 39700255, PMCID: PMC11741621, DOI: 10.1371/journal.pcbi.1012632.
- Lehmann M, Krishnan R, Sucre J, Kulkarni H, Pineda R, Anderson C, Banovich N, Behrsing H, Dean C, Haak A, Gosens R, Kaminski N, Zagorska A, Koziol-White C, Metcalf J, Kim Y, Loebel C, Neptune E, Noel A, Raghu G, Sewald K, Sharma A, Suki B, Sperling A, Tatler A, Turner S, Rosas I, van Ry P, Wille T, Randell S, Pryhuber G, Rojas M, Bourke J, Königshoff M. Precision-Cut Lung Slices: Emerging Tools for Preclinical and Translational Lung Research: An Official American Thoracic Society Workshop Report. American Journal Of Respiratory Cell And Molecular Biology 2024, 72: 16-31. PMID: 39499861, PMCID: PMC11707673, DOI: 10.1165/rcmb.2024-0479st.
- Liu Y, Li N, Qi J, Xu G, Zhao J, Wang N, Huang X, Jiang W, Wei H, Justet A, Adams T, Homer R, Amei A, Rosas I, Kaminski N, Wang Z, Yan X. SDePER: a hybrid machine learning and regression method for cell-type deconvolution of spatial barcoding-based transcriptomic data. Genome Biology 2024, 25: 271. PMID: 39402626, PMCID: PMC11475911, DOI: 10.1186/s13059-024-03416-2.
- LEE C, TRUJILLO G, REGUEIRO-REN A, LIU C, HU B, SUN Y, KHOURY J, KHOURY J, AHANGARI F, ISHIKAWA G, WALIA A, PIVARNIK T, YU S, WOO S, FIORINI V, MCGOVERN J, AL JUMAILY K, SUN H, PENG X, ANTIN-OZERKIS D, SAULER M, KAMINSKI N, HERZOG E. INTERACTIONS BETWEEN MITOCHONDRIAL DNA AND TOLL-LIKE RECEPTOR 9 MEDIATES PULMONARY FIBROSIS. CHEST Journal 2024, 166: a3384-a3386. DOI: 10.1016/j.chest.2024.06.2020.
- Ruwisch J, Schupp J, Bartkute B, Artysh N, Kaminski N, Prasse A. Dissecting the immune cell niche in pulmonary sarcoidosis – CXCL10+ monocyte-derived macrophages are potential drivers of TH17.1 inflammation. 2024, oa953. DOI: 10.1183/13993003.congress-2024.oa953.
- Leiber L, Christian L, Neubert L, Yilmaz H, Kamp J, Plucinski E, Welte T, Falk C, Kaminski N, Jonigk* D, Gottlieb* J, Schupp* J. Single-nuclei RNA-seq reveals aberrant cell populations in restrictive allograft syndrome after lung transplantation. 2024, oa985. DOI: 10.1183/13993003.congress-2024.oa985.
- Auld S, Sheshadri A, Alexander-Brett J, Aschner Y, Barczak A, Basil M, Cohen K, Dela Cruz C, McGroder C, Restrepo M, Ridge K, Schnapp L, Traber K, Wunderink R, Zhang D, Ziady A, Attia E, Carter J, Chalmers J, Crothers K, Feldman C, Jones B, Kaminski N, Keane J, Lewinsohn D, Metersky M, Mizgerd J, Morris A, Ramirez J, Samarasinghe A, Staitieh B, Stek C, Sun J, Evans S. Postinfectious Pulmonary Complications: Establishing Research Priorities to Advance the Field: An Official American Thoracic Society Workshop Report. Annals Of The American Thoracic Society 2024, 21: 1219-1237. PMID: 39051991, DOI: 10.1513/annalsats.202406-651st.
- Trujillo G, Regueiro-Ren A, Liu C, Hu B, Sun Y, Ahangari F, Fiorini V, Ishikawa G, Al Jumaily K, Khoury J, McGovern J, Lee C, Peng X, Pivarnik T, Sun H, Walia A, Woo S, Yu S, Antin-Ozerkis D, Sauler M, Kaminski N, Herzog E, Ryu C. Toll-like Receptor 9 Inhibition Mitigates Fibroproliferative Responses in Translational Models of Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2024, 211: 91-102. PMID: 39189851, PMCID: PMC11755360, DOI: 10.1164/rccm.202401-0065oc.
- Bell J, Davies E, Brereton C, Vukmirovic M, Roberts J, Lunn K, Wickens L, Conforti F, Ridley R, Ceccato J, Sayer L, Johnston D, Vallejo A, Alzetani A, Jogai S, Marshall B, Fabre A, Richeldi L, Monk P, Skipp P, Kaminski N, Offer E, Wang Y, Davies D, Jones M. Spatial transcriptomic validation of a biomimetic model of fibrosis enables re-evaluation of a therapeutic antibody targeting LOXL2. Cell Reports Medicine 2024, 5: 101695. PMID: 39173635, PMCID: PMC11524965, DOI: 10.1016/j.xcrm.2024.101695.
- Unterman A, Zhao A, Neumark N, Schupp J, Ahangari F, Cosme C, Sharma P, Flint J, Stein Y, Ryu C, Ishikawa G, Sumida T, Gomez J, Herazo-Maya J, Dela Cruz C, Herzog E, Kaminski N. Single-Cell Profiling Reveals Immune Aberrations in Progressive Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2024, 210: 484-496. PMID: 38717443, PMCID: PMC11351796, DOI: 10.1164/rccm.202306-0979oc.
- Sand J, Jessen H, Leeming D, Yu S, Lee C, Hu B, Sun Y, Adams T, Pivarnik T, Liu A, Woo S, McGovern J, Fiorini V, Saber T, Higuero-Sevilla J, Gulati M, Kaminski N, Damsky W, Shaw A, Mohanty S, Goobie G, Zhang Y, Herzog E, Ryu C. Plasma collagen neoepitopes are associated with multiorgan disease in the ACCESS and GRADS sarcoidosis cohorts. Thorax 2024, 79: 1136-1144. PMID: 39117421, DOI: 10.1136/thorax-2023-221095.
- Mannes P, Adams T, Farsijani S, Barnes C, Latoche J, Day K, Nedrow J, Ahangari F, Kaminski N, Lee J, Tavakoli S. Noninvasive assessment of the lung inflammation-fibrosis axis by targeted imaging of CMKLR1. Science Advances 2024, 10: eadm9817. PMID: 38896611, PMCID: PMC11186491, DOI: 10.1126/sciadv.adm9817.
- Benn B, Lippitt W, Cortopassi I, Balasubramani G, Barbosa E, Drake W, Herzog E, Gibson K, Chen E, Koth L, Fuhrman C, Lynch D, Kaminski N, Wisniewski S, Carlson N, Maier L. Understanding the Added Value of High-Resolution CT Beyond Chest X-Ray in Determining Extent of Physiologic Impairment. CHEST Journal 2024, 166: 1093-1107. PMID: 38830401, PMCID: PMC11560486, DOI: 10.1016/j.chest.2024.04.031.
- Yuan Y, Sharma L, Tang W, Raredon M, Ahangari F, Khoury J, Wu D, Niklason L, Kaminski N. Single-cell RNA-seq analysis of cell-cell communications in human lung reveals a novel role of VEGF-D in acute lung injury. Physiology 2024, 39: 1314. DOI: 10.1152/physiol.2024.39.s1.1314.
- Marti Munoz J, Khoury J, Ahangari F, Deiuliis G, Kaminski N, Pandit A. Nebulizable Conjugates to Sustain Retention, Delivery, and Efficacy of Galectin-3 Inhibitory Drug TD139 in the Alveolar Space. 2024, a3218-a3218. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a3218.
- Sharma P, Taylor S A, Anderson S, Nekola F, Giuseppe D, Yan X, Schupp J, Balayev A, Justet A, Wuyts W, Vanaudenaerde B, Kaminski N. snRNAseq of IPF Stromal Cells Reveals Dysfunctional Gene Co-expression Profile. 2024, a4903-a4903. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a4903.
- Kim S, Nouws J, Cooley J, Ahangari F, Leng L, Elias J, Kaminski N, Lee P, Redente E, Kang M, Sun H, Herzog E, Bucala R, Prasse A, Sauler M. Alveolar Type 2 Cells With Impaired Proteostasis Signal to Monocyte-derived Macrophages Via a MIF/DDT-CD74 Signaling Network to Promotes Pulmonary Fibrosis in IPF. 2024, a3001-a3001. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a3001.
- Feng J, Liu Y, Kim J, Ahangari F, Kaminski N, Bain W, Jie Z, Dela Cruz C, Sharma L. Anti-inflammatory Roles of Type I Interferon Signaling in the Lung. 2024, a6230-a6230. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a6230.
- Karampitsakos T, Tourki B, Juan-Guardela B, Perrot C, Marlin K, Arsenault A, Binder H, Wuyts W, Rottoli P, Prasse A, Tzouvelekis A, Restrepo Jaramillo R, Qureshi M, Patel K, Bandyopadhyay D, Kaminski N, Herazo-Maya J. A Monocyte-specific Gene-signature Predicts Outcomes in Patients With Idiopathic Pulmonary Fibrosis and Is Reproducible in Peripheral Blood, Bronchoalveolar Lavage, and Lung Tissue. 2024, a2860-a2860. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a2860.
- Marti Munoz J, Owens P, Contessotto P, Balayev A, Serrano M, Dockery P, Kaminski N, Pandit A. Diagnosis of Idiopathic Pulmonary Fibrosis in Human Tissue Samples Using Raman Spectroscopy. 2024, a3265-a3265. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a3265.
- Yuan Y, Sharma L, Tang W, Raredon M, Ahangari F, Khoury J, Wu D, Niklason L, Kaminski N. VEGF-D Is Enriched in the Human Lung Microvascular Niche and Improves Vascular Integrity During Acute Lung Injury. 2024, a4694-a4694. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a4694.
- Adams T, Schupp J, Balayev A, Justet A, Sharma P, Anderson S, Nekola F, Deiuliis G, Yan X, Wuyts W, Vanaudenaerde B, Kaminski N. IPF Aberrant Basaloid Cells Have Chromatin Accessibility Features Distinct From Other Lung Epithelial Cells. 2024, a4898-a4898. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a4898.
- Khoury J, Ahangari F, Manning E, Justet A, barnthaler T, Adams T, Necola F, Alysandratos K, Beermann M, Kotton D, Kaminski N. Profibrotic Role of GPR87 in Pulmonary Fibrosis. 2024, a5183-a5183. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a5183.
- Carter H, Costa R, Adams T, Moore B, Kaminski N, Gurczynski S. Dendritic Cell - Fibroblast Crosstalk Via Toll-like Receptor 9 and Aryl Hyrdocarbon Receptor Signaling Drives Lung Fibrogenesis. 2024, a5207-a5207. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a5207.
- Ruwisch J, Schupp J, Bartkute B, Artysh N, Kaminski N, Prasse A. CXCL10+ Monocyte-derived Macrophages Are Potential Drivers of TH17.1 Inflammation in Pulmonary Sarcoidosis. 2024, a2510-a2510. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a2510.
- Justet A, Mitash N, Pineda R, Adams T, Balayev A, Abu Hussein N, Ishizuka M, Kim H, Khoury J, Ahangari F, Yan X, Kaminski N, Koenigshoff M. Applying Single Cell Profiling to Assess Drug Anti Fibrotic Properties in the Human Precision Cut Lung Slice Model of Fibrosis. 2024, a4906-a4906. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a4906.
- Staab-Weijnitz C, Hennen E, Sarohi V, Pijadina K, Binzenhöfer L, Cabeza-Boeddinghaus N, Merl-Pham J, Onursal C, Jentsch R, Behr J, Gote-Schniering J, Schiller H, Hilgendorff A, Bächinger H, Hauck S, Kaminski N, Eickelberg O, Vanacore R, Basak T. Collagen Prolyl-3-hydroxylase 1 Controls Collagen Quality and Extracellular Matrix Deposition. 2024, a5192-a5192. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a5192.
- Chandran R, Adams T, Kabir I, Gallardo-Vara E, Kaminski N, Gomperts B, Greif D. Dedifferentiated early postnatal lung myofibroblasts redifferentiate in adult disease. Frontiers In Cell And Developmental Biology 2024, 12: 1335061. PMID: 38572485, PMCID: PMC10987733, DOI: 10.3389/fcell.2024.1335061.
- Kawano-Dourado L, Kulkarni T, Ryerson C, Rivera-Ortega P, Baldi B, Chaudhuri N, Funke-Chambour M, Hoffmann-Vold A, Johannson K, Khor Y, Montesi S, Piccari L, Prosch H, Molina-Molina M, Torres J, Bauer-Ventura I, Rajan S, Jacob J, Richards D, Spencer L, Wendelberger B, Jensen T, Quintana M, Kreuter M, Gordon A, Martinez F, Kaminski N, Cornelius V, Lewis R, Adams W, Jenkins G, consortium R, Bravery A, Goodwin A, Etges A, Boshoff A, Günther A, Briggs A, Palmer A, Wilson A, Crawshaw A, Hoffmann-Vold A, Bergeron A, Holland A, Gordon A, Prasse A, Tzouvelekis A, Trachalaki A, Wells A, Nair A, Adegunsoye A, Wendelberger B, Hope-Gill B, Kaul B, Gooptu B, Baldi B, Crestani B, Polanczyk C, Vancheri C, Crobal C, Summers C, Grainge C, Ryerson C, von Garnier C, Huntley C, Ravaglia C, Valenzuela C, Hayton C, McCarthy C, Chambers D, Babalis D, Thicket D, Turner D, Talwar D, Anand D, Dhasmana D, Parek D, Griffiths D, Villegas D, Richards D, Santucci E, Bendstrup E, Balestro E, Tsitoura E, Falaschetti E, Gupta E, Farrand E, Khan F, Martinez F, Bonella F, Lombardi F, Hunninghake G, Saini G, Jenkins G, Gudmundsson G, Collard H, Parfrey H, Prosch H, Fainberg H, Adamali H, Stewart I, Forrest I, Glaspole I, Bauer-Ventura I, Noth I, Cox I, Strambu I, Sellares J, Eaden J, Johnston J, Swigris J, Blaikley J, Kim J, Chung J, Lasky J, Jacob J, Lee J, Behr J, Storrer K, Lewandowska K, Johnson K, Antoniou K, Hostettler K, Johannson K, Hurley K, Hett K, Schwarzkopf L, Fabbri L, Price L, Pearmain L, Kawano-Dourado L, Galvin L, Spencer L, Watson L, Crowley L, Richeldi L, Piccari L, Funke-Chambour M, Molina-Molina M, Jones M, Spears M, Toshner M, Wijsenbeek-Lourens M, Brutsche M, Vasakova M, Quintana M, Gibbons M, Henry M, Keane M, Kreuter M, Man M, Sadatsafavi M, Kaminski N, Chaudhuri N, Weatherley N, Hirani N, Mladinescu O, Spagnolo P, Beirne P, Bryce P, George P, Molyneaux P, Rivera-Ortega P, Crisan-Dabija R, Maida R, Borie R, Takei R, Lewis R, Rolo R, Guler S, Paganoni S, Singh S, Freitas S, Piciucchi S, Malik S, Barratt S, Hart S, Dal Corso S, Fletcher S, Stanel S, Bianchi S, Jones S, Nathan S, Rajan S, Birring S, Montesi S, Reoto T, Corte T, Zaman T, Kulkarni T, Gatheral T, Jensen T, McMillan T, Quinn V, Poletti V, Cornelius V, Cottin V, Adams W, Wuyts W, Kondoh Y, Miyazaki Y, Khor Y, Haider Y. Adaptive multi-interventional trial platform to improve patient care for fibrotic interstitial lung diseases. Thorax 2024, 79: 788-795. PMID: 38448221, PMCID: PMC11287572, DOI: 10.1136/thorax-2023-221148.
- Justet A, Pineda H, Adams T, Balayev A, Mitash N, Ishizuka M, Kim H, Khoury J, Cala-García J, Flint J, Schupp J, Ahangari F, Yan X, Rosas I, Kaminski N, Königshoff M. Fibrotic cocktail treated human precision lung slices replicate the cellular diversity of the IPF lung. Revue Des Maladies Respiratoires 2024, 41: 218. DOI: 10.1016/j.rmr.2024.01.074.
- Justet A, Ravaglia C, Zhao A, Adams N, Agshin B, Kaminski N, Tomasseti S, Poletti V. Identification of abnormal airway niches in the fibrotic lung using spatial transcriptomics. Revue Des Maladies Respiratoires 2024, 41: 215. DOI: 10.1016/j.rmr.2024.01.068.
- Feng J, Liu Y, Kim J, Ahangari F, Kaminski N, Bain W, Jie Z, Dela Cruz C, Sharma L. Anti-inflammatory roles of type I interferon signaling in the lung. American Journal Of Physiology - Lung Cellular And Molecular Physiology 2024, 326: l551-l561. PMID: 38375579, DOI: 10.1152/ajplung.00353.2023.
- Chioccioli M, Liu S, Magruder S, Tata A, Borriello L, McDonough J, Konkimalla A, Kim S, Nouws J, Gonzalez D, Traub B, Ye X, Yang T, Entenberg D, Krishnaswamy S, Hendry C, Kaminski N, Tata P, Sauler M. Stem cell migration drives lung repair in living mice. Developmental Cell 2024, 59: 830-840.e4. PMID: 38377991, DOI: 10.1016/j.devcel.2024.02.003.
- Garmire L, Li Y, Huang Q, Xu C, Teichmann S, Kaminski N, Pellegrini M, Nguyen Q, Teschendorff A. Challenges and perspectives in computational deconvolution of genomics data. Nature Methods 2024, 21: 391-400. PMID: 38374264, DOI: 10.1038/s41592-023-02166-6.
- Montesi S, Gomez C, Beers M, Brown R, Chattopadhyay I, Flaherty K, Garcia C, Gomperts B, Hariri L, Hogaboam C, Jenkins R, Kaminski N, Kim G, Königshoff M, Kolb M, Kotton D, Kropski J, Lasky J, Magin C, Maher T, McCormick M, Moore B, Nickerson-Nutter C, Oldham J, Podolanczuk A, Raghu G, Rosas I, Rowe S, Schmidt W, Schwartz D, Shore J, Spino C, Craig J, Martinez F. Pulmonary Fibrosis Stakeholder Summit: A Joint NHLBI, Three Lakes Foundation, and Pulmonary Fibrosis Foundation Workshop Report. American Journal Of Respiratory And Critical Care Medicine 2024, 209: 362-373. PMID: 38113442, PMCID: PMC10878386, DOI: 10.1164/rccm.202307-1154ws.
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- Tzouvelekis A, Karampitsakos T, Min K, Xylourgidis N, Yu G, Herazo-Maya J, Bizenhofer L, Bennett A, Kaminski N. Role of Mitogen activated-kinase (MAPK)-phosphatase (MKP)-5 in pulmonary fibrosis. 2018, lsc-1111. DOI: 10.1183/13993003.congress-2018.lsc-1111.
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- Shigemura M, Lecuona E, Angulo M, Homma T, Rodríguez DA, Gonzalez-Gonzalez FJ, Welch LC, Amarelle L, Kim SJ, Kaminski N, Budinger GRS, Solway J, Sznajder JI. Hypercapnia increases airway smooth muscle contractility via caspase-7–mediated miR-133a–RhoA signaling. Science Translational Medicine 2018, 10 PMID: 30185650, PMCID: PMC6889079, DOI: 10.1126/scitranslmed.aat1662.
- Sun J, Herazo-Maya J, Molyneaux PL, Maher TM, Kaminski N, Zhao H. Regularized Latent Class Model for Joint Analysis of High-Dimensional Longitudinal Biomarkers and a Time-to-Event Outcome. Biometrics 2018, 75: 69-77. PMID: 30178494, DOI: 10.1111/biom.12964.
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- Anathy V, Lahue KG, Chapman DG, Chia SB, Casey DT, Aboushousha R, van der Velden JLJ, Elko E, Hoffman SM, McMillan DH, Jones JT, Nolin JD, Abdalla S, Schneider R, Seward DJ, Roberson EC, Liptak MD, Cousins ME, Butnor KJ, Taatjes DJ, Budd RC, Irvin CG, Ho YS, Hakem R, Brown KK, Matsui R, Bachschmid MM, Gomez JL, Kaminski N, van der Vliet A, Janssen-Heininger YMW. Reducing protein oxidation reverses lung fibrosis. Nature Medicine 2018, 24: 1128-1135. PMID: 29988126, PMCID: PMC6204256, DOI: 10.1038/s41591-018-0090-y.
- McDonough JE, Martens DS, Tanabe N, Ahangari F, Verleden SE, Maes K, Verleden GM, Kaminski N, Hogg JC, Nawrot TS, Wuyts WA, Vanaudenaerde BM. A role for telomere length and chromosomal damage in idiopathic pulmonary fibrosis. Respiratory Research 2018, 19: 132. PMID: 29986708, PMCID: PMC6038197, DOI: 10.1186/s12931-018-0838-4.
- Everaerts S, Lammertyn EJ, Martens DS, De Sadeleer LJ, Maes K, van Batenburg AA, Goldschmeding R, van Moorsel CHM, Dupont LJ, Wuyts WA, Vos R, Gayan-Ramirez G, Kaminski N, Hogg JC, Janssens W, Verleden GM, Nawrot TS, Verleden SE, McDonough JE, Vanaudenaerde BM. The aging lung: tissue telomere shortening in health and disease. Respiratory Research 2018, 19: 95. PMID: 29751799, PMCID: PMC5948770, DOI: 10.1186/s12931-018-0794-z.
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- Tzouvelekis A, Herazo‐Maya J, Ryu C, Chu J, Zhang Y, Gibson KF, Adonteng‐Boateng P, Li Q, Pan H, Cherry B, Ahmad F, Ford HJ, Herzog EL, Kaminski N, Fares WH. S100A12 as a marker of worse cardiac output and mortality in pulmonary hypertension. Respirology 2018, 23: 771-779. PMID: 29611244, PMCID: PMC6047907, DOI: 10.1111/resp.13302.
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- Lino Cardenas CL, Kessinger CW, Cheng Y, MacDonald C, MacGillivray T, Ghoshhajra B, Huleihel L, Nuri S, Yeri AS, Jaffer FA, Kaminski N, Ellinor P, Weintraub NL, Malhotra R, Isselbacher EM, Lindsay ME. An HDAC9-MALAT1-BRG1 complex mediates smooth muscle dysfunction in thoracic aortic aneurysm. Nature Communications 2018, 9: 1009. PMID: 29520069, PMCID: PMC5843596, DOI: 10.1038/s41467-018-03394-7.
- Nguyen HB, Thomson CC, Kaminski N, Schnapp LM, Madison JM, Glenny RW, Dixon AE. Leadership Primer for Current and Aspiring Pulmonary, Critical Care, and Sleep Medicine Academic Division Chiefs. Annals Of The American Thoracic Society 2018, 15: 655-661. PMID: 29485911, DOI: 10.1513/annalsats.201801-033fr.
- Wolters PJ, Blackwell TS, Eickelberg O, Loyd JE, Kaminski N, Jenkins G, Maher TM, Molina-Molina M, Noble PW, Raghu G, Richeldi L, Schwarz MI, Selman M, Wuyts WA, Schwartz DA. Time for a change: is idiopathic pulmonary fibrosis still idiopathic and only fibrotic? The Lancet Respiratory Medicine 2018, 6: 154-160. PMID: 29413083, PMCID: PMC5903445, DOI: 10.1016/s2213-2600(18)30007-9.
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- Bansal R, Nakagawa S, Yazdani S, van Baarlen J, Venkatesh A, Koh AP, Song WM, Goossens N, Watanabe H, Beasley MB, Powell CA, Storm G, Kaminski N, van Goor H, Friedman SL, Hoshida Y, Prakash J. Integrin alpha 11 in the regulation of the myofibroblast phenotype: implications for fibrotic diseases. Experimental & Molecular Medicine 2017, 49: e396-e396. PMID: 29147013, PMCID: PMC5704196, DOI: 10.1038/emm.2017.213.
- Local and Systemic CD4+ T Cell Exhaustion Reverses with Clinical Resolution of Pulmonary SarcoidosisHawkins C, Shaginurova G, Shelton DA, Herazo-Maya JD, Oswald-Richter KA, Rotsinger JE, Young A, Celada LJ, Kaminski N, Sevin C, Drake WP. Local and Systemic CD4+ T Cell Exhaustion Reverses with Clinical Resolution of Pulmonary Sarcoidosis. Journal Of Immunology Research 2017, 2017: 3642832. PMID: 29234685, PMCID: PMC5695030, DOI: 10.1155/2017/3642832.
- Crouser ED, Fingerlin TE, Yang IV, Maier LA, Nana-Sinkam P, Collman RG, Kaminski N. Application of “Omics” and Systems Biology to Sarcoidosis Research. Annals Of The American Thoracic Society 2017, 14: s445-s451. PMID: 29053026, PMCID: PMC5822413, DOI: 10.1513/annalsats.201707-567ot.
- Herazo-Maya JD, Sun J, Molyneaux PL, Li Q, Villalba JA, Tzouvelekis A, Lynn H, Juan-Guardela BM, Risquez C, Osorio JC, Yan X, Michel G, Aurelien N, Lindell KO, Klesen MJ, Moffatt MF, Cookson WO, Zhang Y, Garcia JGN, Noth I, Prasse A, Bar-Joseph Z, Gibson KF, Zhao H, Herzog EL, Rosas IO, Maher TM, Kaminski N. Validation of a 52-gene risk profile for outcome prediction in patients with idiopathic pulmonary fibrosis: an international, multicentre, cohort study. The Lancet Respiratory Medicine 2017, 5: 857-868. PMID: 28942086, PMCID: PMC5677538, DOI: 10.1016/s2213-2600(17)30349-1.
- Wagner D, Alsafadi H, Mutze K, Costa R, Stein M, Schiller H, Kaminski N, Koenigshoff M. LSC - 2017 - Hippo-YAP/TAZ signaling is deranged in IPF. 2017, oa475. DOI: 10.1183/1393003.congress-2017.oa475.
- Montgomery R, Yu G, Ahangari F, Herazo-Maya J, Pestano L, Dalby C, Dickinson B, Nicholas C, Gallant-Behm C, Brower J, Kuehl P, McDonald J, Kaminski N. Feasibility, distribution, and efficacy of an inhaled oligonucleotide mimic of miR-29 for pulmonary fibrosis induced by bleomycin in rats. 2017, pa3480. DOI: 10.1183/1393003.congress-2017.pa3480.
- Mcdonough J, Vanaudenaerde B, Wuyts W, Kaminski N. Consensus network analysis reveals pathways associated with lung function decline in both COPD and IPF. 2017, pa3484. DOI: 10.1183/1393003.congress-2017.pa3484.
- Vukmirovic M, Yan X, Gibson K, Gulati M, DeIuliis G, Woolard T, Adams T, Hu B, Zang W, Mihaljinec A, Luijk H, Aurelien N, O'Neal S, Becich M, Hochheiser H, Herzog E, Senior R, Chen E, Morris A, Leader J, Zhang Y, “Skip” Garcia J, Wisniewski S, Benos P, Maier L, Moller D, Drake W, Koth L, Kaminski N. Insights from RNA-sequencing of bronchoalveolar lavage cells in a large sarcoidosis cohort. 2017, oa2907. DOI: 10.1183/1393003.congress-2017.oa2907.
- Schupp JC, Vukmirovic M, Kaminski N, Prasse A. Transcriptome profiles in sarcoidosis and their potential role in disease prediction. Current Opinion In Pulmonary Medicine 2017, 23: 487-492. PMID: 28590292, PMCID: PMC5637542, DOI: 10.1097/mcp.0000000000000403.
- Korde A, Jin L, Zhang JG, Ramaswamy A, Hu B, Kolahian S, Guardela BJ, Herazo-Maya J, Siegfried JM, Stabile L, Pisani MA, Herbst RS, Kaminski N, Elias JA, Puchalski JT, Takyar SS. Lung Endothelial MicroRNA-1 Regulates Tumor Growth and Angiogenesis. American Journal Of Respiratory And Critical Care Medicine 2017, 196: 1443-1455. PMID: 28853613, PMCID: PMC5736970, DOI: 10.1164/rccm.201610-2157oc.
- Ardini-Poleske ME, Clark RF, Ansong C, Carson JP, Corley RA, Deutsch GH, Hagood JS, Kaminski N, Mariani TJ, Potter SS, Pryhuber GS, Warburton D, Whitsett JA, Palmer SM, Ambalavanan N, . LungMAP: The Molecular Atlas of Lung Development Program. American Journal Of Physiology - Lung Cellular And Molecular Physiology 2017, 313: l733-l740. PMID: 28798251, PMCID: PMC5792185, DOI: 10.1152/ajplung.00139.2017.
- Ryu C, Sun H, Gulati M, Herazo-Maya J, Chen Y, Osafo-Addo A, Brandsdorfer C, Winkler J, Blaul C, Faunce J, Pan H, Woolard T, Tzouvelekis A, Antin-Ozerkis DE, Puchalski JT, Slade M, Gonzalez AL, Bogenhagen DF, Kirillov V, Feghali-Bostwick C, Gibson K, Lindell K, Herzog RI, Dela Cruz CS, Mehal W, Kaminski N, Herzog EL, Trujillo G. Extracellular Mitochondrial DNA Is Generated by Fibroblasts and Predicts Death in Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2017, 196: 1571-1581. PMID: 28783377, PMCID: PMC5754440, DOI: 10.1164/rccm.201612-2480oc.
- Wong CK, Smith CA, Sakamoto K, Kaminski N, Koff JL, Goldstein DR. Aging Impairs Alveolar Macrophage Phagocytosis and Increases Influenza-Induced Mortality in Mice. The Journal Of Immunology 2017, 199: 1060-1068. PMID: 28646038, PMCID: PMC5557035, DOI: 10.4049/jimmunol.1700397.
- Sun J, Herazo‐Maya J, Kaminski N, Zhao H, Warren JL. A Dirichlet process mixture model for clustering longitudinal gene expression data. Statistics In Medicine 2017, 36: 3495-3506. PMID: 28620908, PMCID: PMC5583037, DOI: 10.1002/sim.7374.
- Armstrong HF, Podolanczuk AJ, Barr RG, Oelsner EC, Kawut SM, Hoffman EA, Tracy R, Kaminski N, McClelland RL, Lederer DJ. Serum Matrix Metalloproteinase-7, Respiratory Symptoms, and Mortality in Community-Dwelling Adults. MESA (Multi-Ethnic Study of Atherosclerosis). American Journal Of Respiratory And Critical Care Medicine 2017, 196: 1311-1317. PMID: 28570100, PMCID: PMC5694831, DOI: 10.1164/rccm.201701-0254oc.
- Huleihel L, Sellares J, Cardenes N, Álvarez D, Faner R, Sakamoto K, Yu G, Kapetanaki MG, Kaminski N, Rojas M. Modified mesenchymal stem cells using miRNA transduction alter lung injury in a bleomycin model. American Journal Of Physiology - Lung Cellular And Molecular Physiology 2017, 313: l92-l103. PMID: 28385811, PMCID: PMC5538868, DOI: 10.1152/ajplung.00323.2016.
- Fares WH, Kaminski N. Finally, Progress in Pulmonary Hypertension Associated with Heart Failure with Preserved Ejection Fraction. American Journal Of Respiratory Cell And Molecular Biology 2017, 56: 421-422. PMID: 28362152, PMCID: PMC5449519, DOI: 10.1165/rcmb.2017-0035ed.
- Tan J, Tedrow JR, Nouraie M, Dutta JA, Miller DT, Li X, Yu S, Chu Y, Juan-Guardela B, Kaminski N, Ramani K, Biswas PS, Zhang Y, Kass DJ. Loss of Twist1 in the Mesenchymal Compartment Promotes Increased Fibrosis in Experimental Lung Injury by Enhanced Expression of CXCL12. The Journal Of Immunology 2017, 198: 2269-2285. PMID: 28179498, PMCID: PMC5337810, DOI: 10.4049/jimmunol.1600610.
- Radder JE, Zhang Y, Gregory AD, Yu S, Kelly NJ, Leader JK, Kaminski N, Sciurba FC, Shapiro SD. Extreme Trait Whole-Genome Sequencing Identifies PTPRO as a Novel Candidate Gene in Emphysema with Severe Airflow Obstruction. American Journal Of Respiratory And Critical Care Medicine 2017, 196: 159-171. PMID: 28199135, PMCID: PMC5519967, DOI: 10.1164/rccm.201606-1147oc.
- Huang Y, Ma SF, Espindola MS, Vij R, Oldham JM, Huffnagle GB, Erb-Downward JR, Flaherty KR, Moore BB, White ES, Zhou T, Li J, Lussier YA, Han MK, Kaminski N, Garcia JG, Hogaboam CM, Martinez FJ, Noth I. Microbes Are Associated with Host Innate Immune Response in Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2017, 196: 208-219. PMID: 28157391, PMCID: PMC5519968, DOI: 10.1164/rccm.201607-1525oc.
- Kleyman M, Sefer E, Nicola T, Espinoza C, Chhabra D, Hagood JS, Kaminski N, Ambalavanan N, Bar-Joseph Z. Selecting the most appropriate time points to profile in high-throughput studies. ELife 2017, 6: e18541. PMID: 28124972, PMCID: PMC5319842, DOI: 10.7554/elife.18541.
- Hopkinson NS, Hart N, Jenkins G, Kaminski N, Rosenfeld M, Smyth A, Wilkinson A. Climate change and lung health: the challenge for a new president. Thorax 2017, 72: 295. PMID: 28104829, DOI: 10.1136/thoraxjnl-2017-209978.
- Gomez JL, Kaminski N. Toward Precision Medicine of Symptom Control in Asthma. American Journal Of Respiratory And Critical Care Medicine 2017, 195: 147-148. PMID: 28084831, PMCID: PMC5394790, DOI: 10.1164/rccm.201608-1600ed.
- Vukmirovic M, Herazo-Maya JD, Blackmon J, Skodric-Trifunovic V, Jovanovic D, Pavlovic S, Stojsic J, Zeljkovic V, Yan X, Homer R, Stefanovic B, Kaminski N. Identification and validation of differentially expressed transcripts by RNA-sequencing of formalin-fixed, paraffin-embedded (FFPE) lung tissue from patients with Idiopathic Pulmonary Fibrosis. BMC Pulmonary Medicine 2017, 17: 15. PMID: 28081703, PMCID: PMC5228096, DOI: 10.1186/s12890-016-0356-4.
- Pandit K, Kaminski N. Chapter 7 MicroRNAs in Idiopathic Pulmonary Fibrosis Partners in Health and Disease. 2017, 179-202. DOI: 10.1016/b978-0-12-800553-8.00007-x.
- Modena BD, Bleecker ER, Busse WW, Erzurum SC, Gaston BM, Jarjour NN, Meyers DA, Milosevic J, Tedrow JR, Wu W, Kaminski N, Wenzel SE. Gene Expression Correlated with Severe Asthma Characteristics Reveals Heterogeneous Mechanisms of Severe Disease. American Journal Of Respiratory And Critical Care Medicine 2016, 195: 1449-1463. PMID: 27984699, PMCID: PMC5470748, DOI: 10.1164/rccm.201607-1407oc.
- Tan J, Tedrow JR, Dutta JA, Juan-Guardela B, Nouraie M, Chu Y, Trejo Bittar H, Ramani K, Biswas PS, Veraldi KL, Kaminski N, Zhang Y, Kass DJ. Expression of RXFP1 Is Decreased in Idiopathic Pulmonary Fibrosis. Implications for Relaxin-based Therapies. American Journal Of Respiratory And Critical Care Medicine 2016, 194: 1392-1402. PMID: 27310652, PMCID: PMC5148141, DOI: 10.1164/rccm.201509-1865oc.
- Kass DJ, Kaminski N. Time to share: lessons from post hoc analyses of IPF trials. Thorax 2016, 72: 101. PMID: 27789650, PMCID: PMC5994758, DOI: 10.1136/thoraxjnl-2016-209293.
- Tzouvelekis A, Herazo‐Maya J, Slade M, Chu J, Deiuliis G, Ryu C, Li Q, Sakamoto K, Ibarra G, Pan H, Gulati M, Antin‐Ozerkis D, Herzog EL, Kaminski N. Validation of the prognostic value of MMP‐7 in idiopathic pulmonary fibrosis. Respirology 2016, 22: 486-493. PMID: 27761978, PMCID: PMC5352520, DOI: 10.1111/resp.12920.
- Kusko RL, Brothers JF, Tedrow J, Pandit K, Huleihel L, Perdomo C, Liu G, Juan-Guardela B, Kass D, Zhang S, Lenburg M, Martinez F, Quackenbush J, Sciurba F, Limper A, Geraci M, Yang I, Schwartz DA, Beane J, Spira A, Kaminski N. Integrated Genomics Reveals Convergent Transcriptomic Networks Underlying Chronic Obstructive Pulmonary Disease and Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2016, 194: 948-960. PMID: 27104832, PMCID: PMC5067817, DOI: 10.1164/rccm.201510-2026oc.
- Tzouvelekis A, Yu G, Lino Cardenas CL, Herazo-Maya JD, Wang R, Woolard T, Zhang Y, Sakamoto K, Lee H, Yi JS, DeIuliis G, Xylourgidis N, Ahangari F, Lee PJ, Aidinis V, Herzog EL, Homer R, Bennett AM, Kaminski N. SH2 Domain–Containing Phosphatase-2 Is a Novel Antifibrotic Regulator in Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2016, 195: 500-514. PMID: 27736153, PMCID: PMC5378419, DOI: 10.1164/rccm.201602-0329oc.
- Peng X, Moore M, Mathur A, Zhou Y, Sun H, Gan Y, Herazo‐Maya J, Kaminski N, Hu X, Pan H, Ryu C, Osafo‐Addo A, Homer RJ, Feghali‐Bostwick C, Fares W, Gulati M, Hu B, Lee C, Elias JA, Herzog EL. Plexin C1 deficiency permits synaptotagmin 7–mediated macrophage migration and enhances mammalian lung fibrosis. The FASEB Journal 2016, 30: 4056-4070. PMID: 27609773, PMCID: PMC5102121, DOI: 10.1096/fj.201600373r.
- Tzouvelekis A, Yu G, Herazo-Maya J, Woolard T, Zhang Y, Lee H, Lee P, Herzog E, Bennett A, Kaminski N. SH2 domain-containing phosphatase-SHP-2 is a novel anti-fibrotic regulator in pulmonary fibrosis. 2016, oa4979. DOI: 10.1183/13993003.congress-2016.oa4979.
- Tzouvelekis A, Yu G, Herazo-Maya J, Wang R, Werneck de Castro J, DeIuliis G, Ahangari F, Woolard T, Arrojo e Drigo R, Homer R, Srivastava A, Herzog E, Lee P, Bianco A, Kaminski N. Thyroid hormone inhibits pulmonary fibrosis through enhancement of mitochondrial function in alveolar epithelial cells. 2016, pa780. DOI: 10.1183/13993003.congress-2016.pa780.
- Tan J, Tedrow J, Nouraie M, Dutta J, Chu Y, Ramani K, Biswas P, Juan-guardela B, Kaminski N, Zhang Y, Kass D. P049 Loss of Twist1 in Colα2(I)+ Cells Promotes Increased Fibrosis in Experimental Lung Injury Through C-X-C Motif Ligand 12 (CXCL12). QJM 2016, 109: s37-s38. DOI: 10.1093/qjmed/hcw124.021.
- Tan J, Tedrow J, Nouraie M, Dutta J, Chu Y, Juan-guardela B, Kaminski N, Zhang Y, Kass D, Kass D. Expression of RXFP1 is Decreased in Idiopathic Pulmonary Fibrosis: Implications for Relaxin-Based Therapies. QJM 2016, 109: s5-s6. DOI: 10.1093/qjmed/hcw122.003.
- Yu G, Tzouvelekis A, Wang R, Herazo-Maya J, Srivastava A, Woolard T, Mannam P, Lee P, Bianco A, Kaminski N. Thyroid hormone inhibits pulmonary fibrosis through enhancement of mitochondrial function in alveolar epithelial cells. QJM 2016, 109: s9-s9. DOI: 10.1093/qjmed/hcw124.001.
- Tzouvelekis A, Yu G, Herazo-maya J, Xylourgidis N, Herzog E, Bennett A, Kaminski N. SH2 domain-containing phosphatase-SHP-2 is a novel regulator of fibroblast homeostasis in Pulmonary Fibrosis. QJM 2016, 109: s20-s20. DOI: 10.1093/qjmed/hcw121.002.
- Yu G, Wang R, Ibarra G, Tzouvelekis A, Woolard T, herazo-maya J, Sakamoto K, Li Q, Deluliis G, Ahnangari F, Vukmirovic M, Aurelien N, Adams T, Munivar A, Kaminski N. P063 The Distribution and Efficacy of MiR-29 Mimicry as a Therapy for Pulmonary Fibrosis Induced by Bleomycin in Mice. QJM 2016, 109: s42-s43. DOI: 10.1093/qjmed/hcw124.036.
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- Prasse A, Jäger B, Wirtz V, Carleo A, Kaminski N. Airway basal cells of patients with IPF are epigenetically reprogrammed and promote fibrosis. QJM 2016, 109: s7-s7. DOI: 10.1093/qjmed/hcw123.002.
- Prasse A, Jäger B, Wirtz V, Carleo A, Kaminski N. P084 Airway basal cells of patients with IPF are epigenetically reprogrammed and promote fibrosis. QJM 2016, 109: s50-s51. DOI: 10.1093/qjmed/hcw127.020.
- Collard HR, Ryerson CJ, Corte TJ, Jenkins G, Kondoh Y, Lederer DJ, Lee JS, Maher TM, Wells AU, Antoniou KM, Behr J, Brown KK, Cottin V, Flaherty KR, Fukuoka J, Hansell DM, Johkoh T, Kaminski N, Kim DS, Kolb M, Lynch DA, Myers JL, Raghu G, Richeldi L, Taniguchi H, Martinez FJ. Acute Exacerbation of Idiopathic Pulmonary Fibrosis. An International Working Group Report. American Journal Of Respiratory And Critical Care Medicine 2016, 194: 265-275. PMID: 27299520, DOI: 10.1164/rccm.201604-0801ci.
- Li X, Hawkins GA, Moore WC, Hastie AT, Ampleford EJ, Milosevic J, Li H, Busse WW, Erzurum SC, Kaminski N, Wenzel SE, Bleecker ER, Meyers DA. Expression of asthma susceptibility genes in bronchial epithelial cells and bronchial alveolar lavage in the Severe Asthma Research Program (SARP) cohort. Journal Of Asthma 2016, 53: 775-782. PMID: 27050946, PMCID: PMC5137190, DOI: 10.3109/02770903.2016.1158268.
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- Brownell R, Kaminski N, Woodruff PG, Bradford WZ, Richeldi L, Martinez FJ, Collard HR. Precision Medicine: The New Frontier in Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2016, 193: 1213-8. PMID: 26991475, PMCID: PMC5440061, DOI: 10.1164/rccm.201601-0169ci.
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- Mise N, Savai R, Yu H, Schwarz J, Kaminski N, Eickelberg O. Zyxin Is a Transforming Growth Factor-β (TGF-β)/Smad3 Target Gene That Regulates Lung Cancer Cell Motility via Integrin α5β1*. Journal Of Biological Chemistry 2012, 287: 31393-31405. PMID: 22778267, PMCID: PMC3438968, DOI: 10.1074/jbc.m112.357624.
- Shi Y, Cao J, Gao J, Zheng L, Goodwin A, An CH, Patel A, Lee JS, Duncan SR, Kaminski N, Pandit KV, Rosas IO, Choi AM, Morse D. Retinoic Acid–related Orphan Receptor-α Is Induced in the Setting of DNA Damage and Promotes Pulmonary Emphysema. American Journal Of Respiratory And Critical Care Medicine 2012, 186: 412-419. PMID: 22744720, PMCID: PMC5450975, DOI: 10.1164/rccm.201111-2023oc.
- Richards TJ, Kaminski N, Gibson KF. Plasma Proteins for Risk Prediction in Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2012, 185: 1329-1330. PMID: 22707740, PMCID: PMC5448581, DOI: 10.1164/ajrccm.185.12.1329.
- Takahashi S, Pandit K, Kaminski N, Shapiro S. High Fat Diet Protects Mice From Cigarette Smoke-Induced Emphysema In Part By Altering Let 7b MicroRNA And Subsequent Oncostatin Signaling. 2012, a3754-a3754. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a3754.
- Brothers J, Kusko R, Liu G, Luo L, Guardela B, Tedrow J, Alekseyev Y, Yang I, Correll M, Geraci M, Quackenbush J, Sciurba F, Sebastiani P, Lenburg M, Kaminski N, Schwartz D, Spira A, Beane J. Identification Of Lung Disease-Associated Novel Transcripts And Alternative Splicing By RNA-Sequencing. 2012, a4892-a4892. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a4892.
- Prasse A, Vuga L, Richards T, Kaminski N. Gene Expression Of BAL Cells And PBMCs Predicts Survival Via Different Pathways In IPF. 2012, a2660-a2660. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a2660.
- Vij R, Huang Y, Ma S, Broderick S, White S, Strek M, Kaminski N, Garcia J, Noth I. Molecular Pathways Associated With Autoimmunity In Patients With Idiopathic Pulmonary Fibrosis. 2012, a5175-a5175. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a5175.
- Tedrow J, Juan-Guardela B, Zhang Y, Kass D, Kahloon R, Leader J, Shapiro S, Geraci M, Quackenbush J, Schwartz D, Spira A, Sciurba F, Kaminski N. Elevated PTX3 Expression Is Specific For Emphysema Severity In Lung Tissue And Plasma Of Patients With COPD. 2012, a1002-a1002. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a1002.
- Guardela B, Herazo J, Tedrow J, Chensny L, Richards T, Spira A, Correll M, Quackenbush J, Geraci M, Schwartz D, Sciurba F, Gibson K, Pandit K, Kaminski N. The Expression Of Long Intergenic Noncoding RNAs In Idiopathic Pulmonary Fibrosis And Their Possible Role As Suppressors Of Proliferation. 2012, a3507-a3507. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a3507.
- Kusko R, Brothers J, Liu G, Luo L, Guardela B, Tedrow J, Aleksyev Y, Yang I, Correll M, Geraci M, Quackenbush J, Sciurba F, Lenburg M, Schwartz D, Beane J, Kaminski N, Spira A. Comprehensive Genomic Profiling Of The Lung Transcriptome In Emphysema And IPF Using RNA-Seq. 2012, a2664-a2664. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a2664.
- Zhang Y, Tedrow J, Zeng Q, Bon J, Chu Y, Duncan S, Weissfeld J, Leader K, Fuhrman C, Branch R, Porter M, Kaminski N, Sciurba F. Association Of Plasma Levels Of PTX3 With Clinical Phenotypes Of Chronic Obstructive Pulmonary Disease. 2012, a2670-a2670. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a2670.
- Yu G, Pandit K, Milosevic J, Montgomery R, Rooij E, Chensny L, Kaminski N. Mimicry Of MiR-29 Attenuates Pulmonary Fibrosis Induced By Bleomycin In Mice. 2012, a4986-a4986. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a4986.
- Richards T, Kass D, Lindell K, Kaminski N, Gibson K. Gender Effects On Pre- And Post-Transplant Survival In Idiopathic Pulmonary Fibrosis. 2012, a3766-a3766. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a3766.
- Wenzel S, Kang D, Kaminski N, Milosevic J, Trudeau J, Meyers D, Bleecker E, Busse W, Erzurum S, Woodruff P. Epithelial Microarray Studies From The Severe Asthma Research Program (SARP). 2012, a2510-a2510. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a2510.
- Rabinovich E, Tedrow J, Schwartz D, Spira A, Quackenbush J, Geraci M, Sciurba F, Guardela B, Pandit K, Zhang Y, Kaminski N. Hypomethylation Of LINE-1 Repeats Is A Predictor Of Carcinogenic Transformation In Normal Histology Lung Tissue. 2012, a3487-a3487. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a3487.
- Bhakta N, Solberg O, Nguyen C, Peng J, Wang T, Nguyen C, Arron J, Fahy J, Bleecker E, Meyers D, Erzurum S, Busse W, Kaminski N, Wenzel S, Woodruff P. Evidence For A Th2 Phenotype Across The Spectrum Of Asthma Severity. 2012, a2193-a2193. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a2193.
- Degar A, Pandit K, Kenche H, Perry Y, Kaminski N, Blumental-Perry A. Smoke-Induced MiRNA Expression Profiles Of Type II Cells Differ From Total Lung And Macrophages. 2012, a2016-a2016. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a2016.
- Kass D, Yu G, Kahloon R, Scheller E, Huleihel L, Deiuliis G, Tedrow J, Guardela B, Leader J, Pandit K, Milosevic J, Alcorn J, Kaminski N. CLF1 Gene Expression Is Increased In Lung Injury And Development. 2012, a5546-a5546. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a5546.
- Bauer Y, Gibson K, Guardella B, Hess P, Klenk A, Lindell K, Renault B, Rey M, Tedrow J, Weber E, Kaminski N, Nayler O. Translational Value Of The Bleomycin Rat Model For The Treatment Of Patients With Idiopathic Pulmonary Fibrosis (IPF). 2012, a6241-a6241. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a6241.
- Bustos M, Kapetanaki M, Meyer M, Donnenberg A, Donnenberg V, Sciurba J, Mroz L, Kaminski N, Rojas M. Age-Related Changes In The Relative Expression Of Functional Genes In Mesenchymal Stem Cells. 2012, a5289-a5289. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a5289.
- Pagnotta E, MacPherson M, Gibson K, Kaminski N, Lindell K. Does The Oxygen Prescription Match The Study Results?: A Prospective Study Of Patients In A Speciality Interstitial Lung Disease Center. 2012, a1490-a1490. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a1490.
- Huleihel L, Bustos M, DeIuliis G, Manor E, Chensny L, Mora A, Rojas M, Kaminski N. Over Expression Of MiRNA In Mesenchymal Stem Cells Alters Their Anti-Fibrotic Properties. 2012, a3513-a3513. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a3513.
- Yang I, Pedersen B, Hennessy C, Davidson E, Bonney M, Leach S, Brown J, Turner J, Guardela B, Tedrow J, Correll M, Geraci M, Kaminski N, Quackenbush J, Sciurba F, Spira A, Schwartz D. Genome-Wide DNA Methylation Patterns In Interstitial Lung Disease (ILD) And Chronic Obstructive Lung Disease (COPD). 2012, a2667-a2667. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a2667.
- Vuga L, Richards T, Tedrow J, Sciurba J, Autore K, Kaminski N, Prasse A. Global Gene Expression Of Bronchoalveolar Lavage (BAL) Cells And Peripheral Blood Mononuclear Cells (PBMCs) In IPF Patients. 2012, a2661-a2661. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a2661.
- Yu G, Tedrow J, Rabinovich E, Drigo R, Gibson K, Yousem S, Richards T, Chensny L, Bianco A, Kaminski N. Role Of DIO2 In Idiopathic Pulmonary Fibrosis. 2012, a4932-a4932. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a4932.
- Campbell J, Luo L, Xiao J, Liu G, Gerrein J, Juan-Guardela B, Tedrow J, Aleksyev Y, Yang I, Correll M, Geraci M, Quackenbush J, Sciurba F, Schwartz D, Kaminski N, Lenburg M, Beane J, Spira A. Characterizing The Small RNA Transcriptome Associated With COPD And ILD Using Next Generation Sequencing. 2012, a5001-a5001. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a5001.
- Rabinovich E, Yu G, Kapetanaki M, Schneider F, Kaminski N. Changes In Expression Of Argonaut Proteins In IPF. 2012, a3473-a3473. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a3473.
- Bustos M, Bueno M, Robison A, Sciurba J, Mroz L, Niedernhofer L, Mora A, Kaminski N, Rojas M. Defective DNA Repair On The Ercc1-/Mice Causes Accelerated Aging And Increased Susceptibility To Lung Injury And Fibrosis. 2012, a5283-a5283. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a5283.
- Violette S, Sheppard D, Rosas I, Arjomandi M, Rice T, Gilman M, Kaminski N, Prasse A, Maroni B. Identification Of Biomarkers To Monitor The Activity Of STX-100, A Humanized Anti-±v²6 Antibody, In A Phase 2a Trial In Idiopathic Pulmonary Fibrosis. 2012, a2659-a2659. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a2659.
- Louis V, Milosevic J, Pandit K, Ben-Yehudah A, Richards T, Choi J, Sciurba J, Zhang Y, Myerburg M, Parwani A, Gibson K, Kaminski N. Cartilage Oligomeric Matrix Protein Is Upregulated And Modulates TGF-² Signaling In Idiopathic Pulmonary Fibrosis. 2012, a5560-a5560. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a5560.
- Mise N, Yu H, Kaminski N, Eickelberg O. The LIM Protein Zyxin Modulates TGF²1-Induced Alveolar Epithelial Cell Motility Via Integrin ±5²1. 2012, a5563-a5563. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a5563.
- Lam A, Sennello J, Herazo-Maya J, Flozak A, Russell S, Kaminski N, Gottardi C. The Wnt Co-Receptors, LRP5/6, Contribute To Fibrosis In Mice And Men. 2012, a3919-a3919. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a3919.
- Rabinovich EI, Kapetanaki MG, Steinfeld I, Gibson KF, Pandit KV, Yu G, Yakhini Z, Kaminski N. Global Methylation Patterns in Idiopathic Pulmonary Fibrosis. PLOS ONE 2012, 7: e33770. PMID: 22506007, PMCID: PMC3323629, DOI: 10.1371/journal.pone.0033770.
- Leikauf GD, Pope-Varsalona H, Concel VJ, Liu P, Bein K, Berndt A, Martin TM, Ganguly K, Jang AS, Brant KA, Dopico RA, Upadhyay S, Di YP, Li Q, Hu Z, Vuga LJ, Medvedovic M, Kaminski N, You M, Alexander DC, McDunn JE, Prows DR, Knoell DL, Fabisiak JP. Integrative Assessment of Chlorine-Induced Acute Lung Injury in Mice. American Journal Of Respiratory Cell And Molecular Biology 2012, 47: 234-244. PMID: 22447970, PMCID: PMC3423464, DOI: 10.1165/rcmb.2012-0026oc.
- Kass DJ, Yu G, Loh KS, Savir A, Borczuk A, Kahloon R, Juan-Guardela B, Deiuliis G, Tedrow J, Choi J, Richards T, Kaminski N, Greenberg SM. Cytokine-Like Factor 1 Gene Expression Is Enriched in Idiopathic Pulmonary Fibrosis and Drives the Accumulation of CD4+ T Cells in Murine Lungs Evidence for an Antifibrotic Role in Bleomycin Injury. American Journal Of Pathology 2012, 180: 1963-1978. PMID: 22429962, PMCID: PMC3354590, DOI: 10.1016/j.ajpath.2012.01.010.
- Ahmad F, Champion HC, Kaminski N. Toward Systems Biology of Pulmonary Hypertension. Circulation 2012, 125: 1477-1479. PMID: 22371329, PMCID: PMC5115209, DOI: 10.1161/circulationaha.112.096396.
- Richards TJ, Park C, Chen Y, Gibson KF, Di Y, Pardo A, Watkins SC, Choi AM, Selman M, Pilewski J, Kaminski N, Zhang Y. Allele-specific transactivation of matrix metalloproteinase 7 by FOXA2 and correlation with plasma levels in idiopathic pulmonary fibrosis. American Journal Of Physiology - Lung Cellular And Molecular Physiology 2012, 302: l746-l754. PMID: 22268124, PMCID: PMC3331579, DOI: 10.1152/ajplung.00319.2011.
- Richards TJ, Kaminski N, Baribaud F, Flavin S, Brodmerkel C, Horowitz D, Li K, Choi J, Vuga LJ, Lindell KO, Klesen M, Zhang Y, Gibson KF. Peripheral Blood Proteins Predict Mortality in Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2012, 185: 67-76. PMID: 22016448, PMCID: PMC3262037, DOI: 10.1164/rccm.201101-0058oc.
- Miše N, Yu H, Kaminski N, Eickelberg O. The LIM protein zyxin modulates TGF-β1-induced cell migration. Pneumologie 2011, 65 DOI: 10.1055/s-0031-1296127.
- Kang DD, Sibille E, Kaminski N, Tseng GC. MetaQC: objective quality control and inclusion/exclusion criteria for genomic meta-analysis. Nucleic Acids Research 2011, 40: e15-e15. PMID: 22116060, PMCID: PMC3258120, DOI: 10.1093/nar/gkr1071.
- Kass DJ, Kaminski N. Evolving Genomic Approaches to Idiopathic Pulmonary Fibrosis: Moving Beyond Genes. Clinical And Translational Science 2011, 4: 372-379. PMID: 22029812, PMCID: PMC3229869, DOI: 10.1111/j.1752-8062.2011.00287.x.
- Yamashita CM, Dolgonos L, Zemans RL, Young SK, Robertson J, Briones N, Suzuki T, Campbell MN, Gauldie J, Radisky DC, Riches DW, Yu G, Kaminski N, McCulloch CA, Downey GP. Matrix Metalloproteinase 3 Is a Mediator of Pulmonary Fibrosis. American Journal Of Pathology 2011, 179: 1733-1745. PMID: 21871427, PMCID: PMC3181358, DOI: 10.1016/j.ajpath.2011.06.041.
- Fabisiak JP, Medvedovic M, Alexander DC, McDunn JE, Concel VJ, Bein K, Jang AS, Berndt A, Vuga LJ, Brant KA, Pope‐Varsalona H, Dopico RA, Ganguly K, Upadhyay S, Li Q, Hu Z, Kaminski N, Leikauf GD. Integrative metabolome and transcriptome profiling reveals discordant energetic stress between mouse strains with differential sensitivity to acrolein‐induced acute lung injury. Molecular Nutrition & Food Research 2011, 55: 1423-1434. PMID: 21823223, PMCID: PMC3482455, DOI: 10.1002/mnfr.201100291.
- Zhou X, Wu W, Hu H, Milosevic J, Konishi K, Kaminski N, Wenzel SE. Genomic Differences Distinguish the Myofibroblast Phenotype of Distal Lung Fibroblasts from Airway Fibroblasts. American Journal Of Respiratory Cell And Molecular Biology 2011, 45: 1256-1262. PMID: 21757679, PMCID: PMC3262668, DOI: 10.1165/rcmb.2011-0065oc.
- Noble PW, Richeldi L, Kaminski N. End of an ERA: Lessons from Negative Clinical Trials in Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2011, 184: 4-5. PMID: 21737589, DOI: 10.1164/rccm.201105-0813ed.
- Gupta D, Harvey SA, Kaminski N, Swamynathan SK. Mouse Conjunctival Forniceal Gene Expression during Postnatal Development and Its Regulation by Krüppel-like Factor 4. Investigative Ophthalmology & Visual Science 2011, 52: 4951-4962. PMID: 21398290, PMCID: PMC3176043, DOI: 10.1167/iovs.10-7068.
- Zhang Y, Handley D, Kaplan T, Yu H, Bais AS, Richards T, Pandit KV, Zeng Q, Benos PV, Friedman N, Eickelberg O, Kaminski N. High Throughput Determination of TGFβ1/SMAD3 Targets in A549 Lung Epithelial Cells. PLOS ONE 2011, 6: e20319. PMID: 21625455, PMCID: PMC3098871, DOI: 10.1371/journal.pone.0020319.
- Yang I, Hennessy C, Davidson E, Bonney M, Leach S, Brown J, Turner J, Guardela B, Tedrow J, Correll M, Geraci M, Kaminski N, Quackenbush J, Sciurba F, Spira A, Schwartz D. Genome-Wide DNA Methylation Patterns In Interstitial Lung Disease (ild) And Chronic Obstructive Lung Disease (COPD). 2011, a1049-a1049. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a1049.
- Juan-Guardela B, Tedrow J, Herazo J, Aboud C, Pandit K, Chensny L, Gur D, Leader J, Benos P, Richards T, Correll M, Quackenbush J, Geraci M, Spira A, Schwartz D, Sciurba F, Kaminski N. MRNA And MicroRNA Expression Profiles Indicate Disease Severity In Patients With Idiopathic Pulmonary Fibrosis. 2011, a6005-a6005. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a6005.
- Yang I, Leach S, Turner J, Kummer N, Brown J, Murphy E, Farias-Hesson E, Sisneros N, Wang Z, Coldren C, Correll M, Geraci M, Kaminski N, Quackenbush J, Sciurba F, Spira A, Schwartz D. Somatic Mutations In The Lungs Of Patients With Idiopathic Pulmonary Fibrosis. 2011, a5537-a5537. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a5537.
- DeIuliis G, Di Giuseppe M, Phinney D, Sala E, Kaminski N, Ortiz L. Differential Expression Of Microrna In Mesenchymal Stem Cell Derived Exosomes. 2011, a3769-a3769. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a3769.
- Coldren C, Gao B, Rice J, Leach S, Yang I, Murphy E, Kaminski N, Quackenbush J, Schwartz D, Sciurba F, Spira A, Geraci M. Genome-Wide Analysis Of Somatic Genetic Alterations In Severe Lung Disease. 2011, a5529-a5529. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a5529.
- Richards T, Kuhlengel T, Choi J, Kaminski N, Bascom R. Does Ambient Air Pollution Exposure Modify Longitudinal Disease Outcomes In A Cohort Of Patients With Idiopathic Pulmonary Fibrosis? 2011, a5433-a5433. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a5433.
- Tedrow J, Juan-Guardela B, Gur D, Leader J, Schwartz D, Spira A, Geraci M, Quackenbush J, Correll M, Richards T, Chensny L, Shapiro S, Sciurba F, Kaminski N. Emphysema Gene Expression Signatures. 2011, a2271-a2271. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a2271.
- Huleihel L, Ben-Yehudah A, Manor E, Milosevic J, Benos P, Chensny L, Kaminski N. Mir 30b As A Potential Modifier Of Fibroblasts Phenotypes In Lung Fibrosis. 2011, a3528-a3528. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a3528.
- Pociask D, Chen K, Kaminski N, Kolls J. Pulmonary Fibrosis In Response To Pharmaceutical Grade Bleomycin Is Independent Of IL-17. 2011, a5982-a5982. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a5982.
- Kass D, Loh K, Borczuk A, Tedrow J, Guardela B, Kaminski N, Greenberg S. Cytokine-Like Factor I (CLF1) Expression Is Increased In Idiopathic Pulmonary Fibrosis (IPF) And Promotes Inflammation But Decreases Fibrosis In Bleomycin Injury. 2011, a2710-a2710. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a2710.
- Mathew B, huang L, Noth I, Ma S, Kaminski N, Zhao Y, Wade M, Berdyshev E, Siegler J, Jacobson J, Weishelbaum R, Natarajan V, Garcia J. Lysocardiolipin Acyltransferase (lycat) Is A Novel Candidate Gene In Radiation-Induced Pulmonary Fibrosis. 2011, a6146-a6146. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a6146.
- Pandit K, Milosevic J, Benos P, Coronello C, Ben-Yehudah A, Hagood J, Ambalavanan N, Kaminski N. Global Microrna Profiles Of Idiopathic Pulmonary Fibrosis Lungs Indicate Reversal Of Lung Differentiation. 2011, a5528-a5528. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a5528.
- Tedrow J, Juan-Guardela B, Pandit K, Gur D, Leader J, Landreneau R, Schwartz D, Geraci M, Quackenbush J, Correll M, Richards T, Chensny L, Spira A, Sciurba F, Kaminski N. Microrna Expression Profiles In Emphysema. 2011, a4099-a4099. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a4099.
- Tedrow J, Juan-Guardela B, Gur D, Leader J, Schwartz D, Spira A, Geraci M, Quackenbush J, Correll M, Richards T, Chensny L, Shapiro S, Vuga L, Sciurba F, Kaminski N. Divergent And Convergent Gene Expression Patterns In Well Phenotyped Patients With COPD And IPF. 2011, a2274-a2274. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a2274.
- Rakova I, Kapetanaki M, Pandit K, Chensny L, Gibson K, Ghedin E, Kaminski N. High-Throughput Sequencing Of MicroRNA In Idiopathic Pulmonary Fibrosis. 2011, a5538-a5538. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a5538.
- The HLA Class II Allele DRB1*1501 Is Over-Represented In Patients With Idiopathic Pulmonary FibrosisXue J, Gochuico B, Feghali-Bostwick C, Noth I, Nathan S, Rosen G, Rosas I, Gibson K, Kaminski N, Sciurba F, Zhang Y, Duncan S. The HLA Class II Allele DRB1*1501 Is Over-Represented In Patients With Idiopathic Pulmonary Fibrosis. 2011, a4272-a4272. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a4272.
- Zhang Y, Noth I, Gibson K, Ma S, Richards T, Bon J, Lindell K, Branch R, Nicolae D, Sciurba F, Garcia A, Kaminski N. A Variant In The Promoter Of MUC5B Is Associated With Idiopathic Pulmonary Fibrosis And Not Chronic Obstructive Pulmonary Disease. 2011, a6395-a6395. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a6395.
- Brothers J, Kusko R, Luo L, Liu G, Guardela B, Tedrow J, Alekseyev Y, Yang I, Correll M, Geraci M, Quackenbush J, Sciurba F, Sebastiani P, Lenburg M, Kaminski N, Schwartz D, Spira A, Beane J. Identifying Novel Transcripts And Alternative Splicing Associated With The ILD And COPD Lung Transcriptome Using MRNA-Seq. 2011, a5540-a5540. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a5540.
- Noth I, Zhang Y, Barber M, Gibson K, Ma S, Lindell K, Kaminski N, Hysi P, Nicolae D, Garcia J. Genome Wide Association Study In Idiopathic Pulmonary Fibrosis Identifies LCLAT1 As A Novel Candidate Gene. 2011, a2266-a2266. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a2266.
- Kapetanaki M, Gupta N, Chensny L, Rojas M, Benos P, Kaminski N. Whole Transcriptome Study Of Mesenchymal Stem Cell Response To TGF-Beta 1. 2011, a6007-a6007. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a6007.
- Kusko R, Beane J, Brothers J, Liu G, Luo L, Guardela B, Tedrow J, Aleksyev Y, Yang I, Correll M, Geraci M, Quackenbush J, Sciurba F, Lenburg M, Schwartz D, Kaminski N, Spira A. Characterizing The Lung Disease Transcriptome With Next Generation Rna-Sequencing. 2011, a5539-a5539. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a5539.
- Varisco B, Hagood J, Kaminski N, Whitsett J. Pulmonary Fibroblast Thy-1 Expression Modulates Elastin Expression During Alveolarization - In Part Via Rhoa Activation Of JNK. 2011, a3492-a3492. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a3492.
- Xue J, Kahloon R, Bhargava A, Banga G, Gochuico B, Dacic S, Gibson K, Kaminski N, Sciurba F, Rosas I, Otterbein L, Zhang Y, Duncan S. Decreased Survival Of Idiopathic Pulmonary Fibrosis Patients With Heat Shock Protein 70 Autoreactivity. 2011, a4275-a4275. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a4275.
- Herazo J, Gibson K, Juan-Guardela B, Ma S, Richards T, Lussier Y, Duncan S, Tseng G, Lindell K, Garcia J, Noth I, Kaminski N. Peripheral Blood Monuclear Cells Gene Expression Patterns Predict Mortality In Patients With Idiopathic Pulmonary Fibrosis. 2011, a5306-a5306. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a5306.
- Kang D, Tedrow J, Richards T, Schwartz D, Schwarz M, Martinez F, Limper A, Quackenbush J, Geraci M, Bartholmai B, Spira A, Tseng G, Sciurba F, Kaminski N. Unsupervised Combination Of Clinical And Gene Expression Data Elucidates Intermediate Phenotypes In Ild And COPD. 2011, a4087-a4087. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a4087.
- Fitzpatrick M, Tedrow J, Hillenbrand M, Lucht L, Richards T, Zhang Y, Kaminski N, Sciurba F, Morris A. Gene Expression Of Pneumocystis Jirovecii Infection In COPD Lungs. 2011, a4144-a4144. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a4144.
- Zhang Y, Noth I, Garcia JG, Kaminski N. A Variant in the Promoter of MUC5B and Idiopathic Pulmonary Fibrosis. New England Journal Of Medicine 2011, 364: 1576-1577. PMID: 21506748, PMCID: PMC4327944, DOI: 10.1056/nejmc1013504.
- Bais AS, Kaminski N, Benos PV. Finding subtypes of transcription factor motif pairs with distinct regulatory roles. Nucleic Acids Research 2011, 39: e76-e76. PMID: 21486752, PMCID: PMC3113591, DOI: 10.1093/nar/gkr205.
- The HLA Class II Allele DRB1*1501 Is Over-Represented in Patients with Idiopathic Pulmonary FibrosisXue J, Gochuico BR, Alawad AS, Feghali-Bostwick CA, Noth I, Nathan SD, Rosen GD, Rosas IO, Dacic S, Ocak I, Fuhrman CR, Cuenco KT, Smith MA, Jacobs SS, Zeevi A, Morel PA, Pilewski JM, Valentine VG, Gibson KF, Kaminski N, Sciurba FC, Zhang Y, Duncan SR. The HLA Class II Allele DRB1*1501 Is Over-Represented in Patients with Idiopathic Pulmonary Fibrosis. PLOS ONE 2011, 6: e14715. PMID: 21373184, PMCID: PMC3044131, DOI: 10.1371/journal.pone.0014715.
- Leikauf GD, Concel VJ, Liu P, Bein K, Berndt A, Ganguly K, Jang AS, Brant KA, Dietsch M, Pope-Varsalona H, Dopico RA, Di YP, Li Q, Vuga LJ, Medvedovic M, Kaminski N, You M, Prows DR. Haplotype Association Mapping of Acute Lung Injury in Mice Implicates Activin A Receptor, Type 1. American Journal Of Respiratory And Critical Care Medicine 2011, 183: 1499-1509. PMID: 21297076, PMCID: PMC3137140, DOI: 10.1164/rccm.201006-0912oc.
- Pandit KV, Milosevic J, Kaminski N. MicroRNAs in idiopathic pulmonary fibrosis. Translational Research 2011, 157: 191-199. PMID: 21420029, DOI: 10.1016/j.trsl.2011.01.012.
- Stabile LP, Rothstein ME, Keohavong P, Lenzner D, Land SR, Gaither-Davis AL, Kim KJ, Kaminski N, Siegfried JM. Targeting of Both the c-Met and EGFR Pathways Results in Additive Inhibition of Lung Tumorigenesis in Transgenic Mice. Cancers 2010, 2: 2153-2170. PMID: 21390244, PMCID: PMC3049550, DOI: 10.3390/cancers2042153.
- Jain S, Raghavachari N, Woodhouse K, Kaminski N, Gladwin M. Characterization of Microrna Expression Profile In Platelets In Sickle Cell Disease. Blood 2010, 116: 2030. DOI: 10.1182/blood.v116.21.2030.2030.
- Erzurum S, Rounds SI, Stevens T, Aldred M, Aliotta J, Archer SL, Asosingh K, Balaban R, Bauer N, Bhattacharya J, Bogaard H, Choudhary G, Dorn GW, Dweik R, Fagan K, Fallon M, Finkel T, Geraci M, Gladwin MT, Hassoun PM, Humbert M, Kaminski N, Kawut SM, Loscalzo J, McDonald D, McMurtry IF, Newman J, Nicolls M, Rabinovitch M, Shizuru J, Oka M, Polgar P, Rodman D, Schumacker P, Stenmark K, Tuder R, Voelkel N, Sullivan E, Weinshilboum R, Yoder MC, Zhao Y, Gail D, Moore TM. Strategic Plan for Lung Vascular Research. American Journal Of Respiratory And Critical Care Medicine 2010, 182: 1554-1562. PMID: 20833821, PMCID: PMC3029941, DOI: 10.1164/rccm.201006-0869ws.
- Mi Z, Shen K, Song N, Cheng C, Song C, Kaminski N, Tseng GC. Module-based prediction approach for robust inter-study predictions in microarray data. Bioinformatics 2010, 26: 2586-2593. PMID: 20719761, PMCID: PMC2951088, DOI: 10.1093/bioinformatics/btq472.
- Liu G, Friggeri A, Yang Y, Milosevic J, Ding Q, Thannickal V, Kaminski N, Abraham E. miR-21 mediates fibrogenic activation of pulmonary fibroblasts and lung fibrosis. Journal Of Cell Biology 2010, 190: i3-i3. DOI: 10.1083/jcb1902oia3.
- Kjetil A, EICKELBERG O, GAULDIE J, KAMINSKI N, Martin K. Have advanced research technologies made real impact on respiratory medicine? Respirology 2010, 15: 876-880. PMID: 20646243, DOI: 10.1111/j.1440-1843.2010.01811.x.
- Liu G, Friggeri A, Yang Y, Milosevic J, Ding Q, Thannickal VJ, Kaminski N, Abraham E. miR-21 mediates fibrogenic activation of pulmonary fibroblasts and lung fibrosis. Journal Of Experimental Medicine 2010, 207: 1589-1597. PMID: 20643828, PMCID: PMC2916139, DOI: 10.1084/jem.20100035.
- Leikauf GD, Pope-Varsalona H, Concel VJ, Liu P, Bein K, Brant KA, Dopico RA, Di YP, Jang AS, Dietsch M, Medvedovic M, Li Q, Vuga LJ, Kaminski N, You M, Prows DR. Functional Genomics of Chlorine-induced Acute Lung Injury in Mice. Annals Of The American Thoracic Society 2010, 7: 294-296. PMID: 20601635, PMCID: PMC3136967, DOI: 10.1513/pats.201001-005sm.
- Lindell K, Zellem E, Hoffman L, Richards T, Gibson K, Dhir R, Bisceglia M, Yousem S, Nichols L, Kaminski N. The Warm Autopsy Program For Patients With Idiopathic Pulmonary Fibrosis. 2010, a4016-a4016. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a4016.
- Lindell K, Black T, Hoffman K, Richards T, Kaminski N, Gibson K, Tino G, Simonelli P, Bascom R, Cordova F, Patel N, Criner G. The Pennsylvania Idiopathic Pulmonary Fibrosis (PA-IPF) State Registry. 2010, a2964-a2964. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a2964.
- Kuhlengel T, Bascom R, Qian Z, Kaminski N, Lindell K, Tino G, Criner G, Simonelli P, Cordova F, Patel N, Gibson K. Ambient Air Pollution Exposure of Patients In The Pennsylvania Idiopathic Pulmonary Fibrosis (PA-IPF) State Registry. 2010, a4618-a4618. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a4618.
- Richards T, Lindell K, Klesen M, Kaminski N, Zhang Y, Gibson K. Peripheral Blood Biomarkers Predict Disease Progression And Mortality In IPF. 2010, a1120-a1120. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a1120.
- Lindell K, Hoffman K, Black T, Richards T, Choi J, Saul M, Kaminski N, Gibson K. Extent And Impact Of Pulmonary Fibrosis In A Regional Health System. 2010, a2966-a2966. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a2966.
- Cornwell W, Grabianowski C, Chensny L, Gaughan J, Sciurba F, Kaminski N, Richards T, Rogers T, Criner G. Alternatively Activated Macrophage (M2) Marker Expression In Leukocytes During Acute Exacerbation Of COPD (AECOPD). 2010, a5342-a5342. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a5342.
- Singh M, Tzfati Y, Chensny L, Benos P, Kaminski N. Regulation Telomerase and Telomere Length In IPF By MicroRNAs. 2010, a2297-a2297. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a2297.
- Leikauf G, Pope-Varsalona H, Concel V, Liu P, Bein K, Brant K, Dopico R, Di Y, Jang A, Medvedovic M, Li Q, Vega L, Kaminski N, You M, Prows D. Candidate Susceptibility Genes Identified By Genomewide Analysis Of Chloride-induced Acute Lung Injury In Mice. 2010, a5370-a5370. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a5370.
- Konishi K, Richards T, Song J, Chensny L, Lindell K, Herazo J, Zhang Y, Gibson K, Kaminski N, Kim D. Gene Expression Profiles Of Pulmonary Fibrosis Reveal Developmental Functions As Determinants That Distinguish NSIP And UIP In Interstitial Pneumonias. 2010, a2492-a2492. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a2492.
- Zhang Y, Song J, Richards T, Porter M, Kaminski N, Hagerty S, Choi A, Kim D. Peripheral Blood Biomarkers Of Acute Exacerbation In Idiopathic Pulmonary Fibrosis. 2010, a1118-a1118. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a1118.
- Richards T, Choi J, Zhang Y, Kaminski N, Studer S. Combinatorial Analysis Of Secreted Plasma Proteins Is Associated With Long-term Outcome In Lung Transplant Recipients. 2010, a1006-a1006. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a1006.
- Ben-Yehudah A, Castro C, Eisinger V, Kinney T, Kaminski N, Schatten G, Carlisle D. Bronchial And Alveolar Epithelium Differentiated From Embryonic Stem Cells. 2010, a4916-a4916. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a4916.
- Yu G, Pandit K, Parwani A, Gilbert S, Ei-Hefnawy T, Richards T, Rosas I, Chensny L, Kaminski N. A Potential Role Of MMP19 In The Development And Progression Of Human Lung Cancer. 2010, a4983-a4983. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a4983.
- Wu W, Zhou X, Hu H, Konishi K, Milosevic J, Kaminski N, Wenzel S. Characterization Of Airway- And Distal Lung Fibroblasts Using Systems Biology Approaches. 2010, a6409-a6409. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a6409.
- Zhou X, Wu W, Hu H, Konishi K, Milosevic J, Kaminski N, Wenzel S. Gene Expression Profiles Differentiate Human Airway From Parenchymal Fibroblasts. 2010, a3978-a3978. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a3978.
- Yousem SA, Gibson K, Kaminski N, Oddis CV, Ascherman DP. The pulmonary histopathologic manifestations of the anti-Jo-1 tRNA synthetase syndrome. Modern Pathology 2010, 23: 874-880. PMID: 20228783, DOI: 10.1038/modpathol.2010.65.
- Gilani SR, Vuga LJ, Lindell KO, Gibson KF, Xue J, Kaminski N, Valentine VG, Lindsay EK, George MP, Steele C, Duncan SR. CD28 Down-Regulation on Circulating CD4 T-Cells Is Associated with Poor Prognoses of Patients with Idiopathic Pulmonary Fibrosis. PLOS ONE 2010, 5: e8959. PMID: 20126467, PMCID: PMC2813297, DOI: 10.1371/journal.pone.0008959.
- Rajkumar R, Konishi K, Richards TJ, Ishizawar DC, Wiechert AC, Kaminski N, Ahmad F. Genomewide RNA expression profiling in lung identifies distinct signatures in idiopathic pulmonary arterial hypertension and secondary pulmonary hypertension. AJP Heart And Circulatory Physiology 2010, 298: h1235-h1248. PMID: 20081107, PMCID: PMC2853417, DOI: 10.1152/ajpheart.00254.2009.
- Lindell KO, Olshansky E, Song MK, Zullo TG, Gibson KF, Kaminski N, Hoffman LA. Impact of a disease-management program on symptom burden and health-related quality of life in patients with idiopathic pulmonary fibrosis and their care partners. Heart & Lung 2009, 39: 304-313. PMID: 20561836, PMCID: PMC3467095, DOI: 10.1016/j.hrtlng.2009.08.005.
- Wu W, Kaminski N. Chronic lung diseases. WIREs Mechanisms Of Disease 2009, 1: 298-308. PMID: 20835999, DOI: 10.1002/wsbm.23.
- Ben-Yehudah A, Navara CS, Redinger CJ, Mich-Basso JD, Castro CA, Oliver S, Chensny LJ, Richards TJ, Kaminski N, Schatten G. Pluripotency genes overexpressed in primate embryonic stem cells are localized on homologues of human chromosomes 16, 17, 19, and X. Stem Cell Research 2009, 4: 25-37. PMID: 19854689, PMCID: PMC2818202, DOI: 10.1016/j.scr.2009.09.003.
- Bon JM, Leader JK, Weissfeld JL, Coxson HO, Zheng B, Branch RA, Kondragunta V, Lee JS, Zhang Y, Choi AM, Lokshin AE, Kaminski N, Gur D, Sciurba FC. The Influence of Radiographic Phenotype and Smoking Status on Peripheral Blood Biomarker Patterns in Chronic Obstructive Pulmonary Disease. PLOS ONE 2009, 4: e6865. PMID: 19718453, PMCID: PMC2730536, DOI: 10.1371/journal.pone.0006865.
- Scotton CJ, Krupiczojc MA, Königshoff M, Mercer PF, Lee YC, Kaminski N, Morser J, Post JM, Maher TM, Nicholson AG, Moffatt JD, Laurent GJ, Derian CK, Eickelberg O, Chambers RC. Increased local expression of coagulation factor X contributes to the fibrotic response in human and murine lung injury. Journal Of Clinical Investigation 2009, 119: 2550-2563. PMID: 19652365, PMCID: PMC2735922, DOI: 10.1172/jci33288.
- Richards TJ, Eggebeen A, Gibson K, Yousem S, Fuhrman C, Gochuico BR, Fertig N, Oddis CV, Kaminski N, Rosas IO, Ascherman DP. Characterization and peripheral blood biomarker assessment of anti–Jo‐1 antibody–positive interstitial lung disease. Arthritis & Rheumatism 2009, 60: 2183-2192. PMID: 19565490, PMCID: PMC2710404, DOI: 10.1002/art.24631.
- Stuckenholz C, Lu L, Thakur P, Kaminski N, Bahary N. FACS-Assisted Microarray Profiling Implicates Novel Genes and Pathways in Zebrafish Gastrointestinal Tract Development. Gastroenterology 2009, 137: 1321-1332. PMID: 19563808, PMCID: PMC2785077, DOI: 10.1053/j.gastro.2009.06.050.
- Di Giuseppe M, Gambelli F, Hoyle GW, Lungarella G, Studer SM, Richards T, Yousem S, McCurry K, Dauber J, Kaminski N, Leikauf G, Ortiz LA. Systemic Inhibition of NF-κB Activation Protects from Silicosis. PLOS ONE 2009, 4: e5689. PMID: 19479048, PMCID: PMC2682759, DOI: 10.1371/journal.pone.0005689.
- Snyder JC, Reynolds SD, Hollingsworth JW, Li Z, Kaminski N, Stripp BR. Clara Cells Attenuate the Inflammatory Response through Regulation of Macrophage Behavior. American Journal Of Respiratory Cell And Molecular Biology 2009, 42: 161-171. PMID: 19423773, PMCID: PMC2822978, DOI: 10.1165/rcmb.2008-0353oc.
- Corcoran DL, Pandit KV, Gordon B, Bhattacharjee A, Kaminski N, Benos PV. Features of Mammalian microRNA Promoters Emerge from Polymerase II Chromatin Immunoprecipitation Data. PLOS ONE 2009, 4: e5279. PMID: 19390574, PMCID: PMC2668758, DOI: 10.1371/journal.pone.0005279.
- Konishi K, Gibson KF, Lindell KO, Richards TJ, Zhang Y, Dhir R, Bisceglia M, Gilbert S, Yousem SA, Song JW, Kim DS, Kaminski N. Gene Expression Profiles of Acute Exacerbations of Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2009, 180: 167-175. PMID: 19363140, PMCID: PMC2714820, DOI: 10.1164/rccm.200810-1596oc.
- Kliment C, Gochuico B, Kaminski N, Rosas I, Oury T. Contrasts between IPF and Mouse Models of Pulmonary Fibrosis. 2009, a2716. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a2716.
- Geyer A, Gochuico B, Kaminski N, Morse D, Rosas I. Decreased Expression of Cholesterol and Fatty Acid Synthesis Genes in Lungs of Patients with Pulmonary Fibrosis. 2009, a1912. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a1912.
- Tedrow J, Konishi K, Landreneau R, Luketich J, Kaminski N, Sciurba F. Association of Radiographic COPD Phenotypes with Differential Gene Expression. 2009, a2996. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a2996.
- Milosevic J, Pandit K, Jacobs R, Benos P, Yakhini Z, Chensny L, Kaminski N. The Role of miR-154 microRNA Family in IPF. 2009, a2732. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a2732.
- Konishi K, Gibson K, Richards T, Lindell K, Chensny L, Zhang Y, Kaminski N, Kim D. Expression of Alpha-Defensins in the Lungs and Peripheral Blood of Patients with Acute Exacerbations of Idiopathic Pulmonary Fibrosis. 2009, a3020. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a3020.
- Cunanan, Rogers T, Ciccolella D, Grabianowski C, Chensny L, Crookshank A, Gaughan J, Sciurba F, Kaminski N, Richards T, Mamary A, Chatila W, Criner G. Altered Immune Competence of Peripheral Blood Leukocytes during AECOPD. 2009, a2975. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a2975.
- Vuga L, Ben-Yehudah A, Pandit K, Zheng Y, Sciurba J, Milosevic J, Chensny L, Konishi K, Gibson K, Kaminski N. Cartilage Oligomeric Matrix Protein Is a Potential Biomarker for Idiopathic Pulmonary Fibrosis. 2009, a3487. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a3487.
- Yu G, Konishi K, Herazo J, Hanley D, Pacheco G, Richards T, Kaminski N, Rosas I. Positive Feedback Loop Regulates Transcription of Syndecan-2 and Multiple TGF-beta Target Genes in HL-60 Cells. 2009, a1876. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a1876.
- Konishi K, Gochuico B, Herazo J, Richards T, MacDonald S, Kaminski N, Rosas I. Molecular Characterization of Early Interstitial Lung Disease in Familial Pulmonary Fibrosis. 2009, a3494. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a3494.
- Pandit K, Corcoran D, Konishi K, Benos P, Kaminski N. Expression and Role of miR-30 in Idiopathic Pulmonary Fibrosis. 2009, a5310. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a5310.
- Ben-Yehudah A, Yousef H, LeJeune M, Huleihel L, Takac E, Chensny L, Kaminski N. The MicroRNA Let7d Causes Mesenchymal to Epithelial Transition in Human Lung Fibroblasts. 2009, a2490. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a2490.
- Herazo J, Juan B, Chensny L, Richards T, Konishi K, leJeune M, Ravinovich E, Lindell K, Gibson K, Kaminski N. Gene Expression Patterns of Peripheral Blood Mononuclear Cells in Patients with Idiopathic Pulmonary Fibrosis. 2009, a2731. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a2731.
- Rosas I, Weissfeld J, Furman C, Gibson K, Leader J, Gur D, Tedrow J, Kaminski N, Sciurba F. Early Interstitial Lung Disease in Smokers from the PLuSS Study. 2009, a1125. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a1125.
- Voeghtly L, Kaminski N, Oury T. MMP activation peptide detection in biological samples as a diagnostic marker of idiopathic pulmonary fibrosis. The FASEB Journal 2009, 23: 572.11-572.11. DOI: 10.1096/fasebj.23.1_supplement.572.11.
- Singh M, Patel J, Majister M, Kaminski N. Regulation of microRNA let-7d Expression in Idiopathic Pulmonary Fibrosis. 2009, a3016. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a3016.
- Vuga LJ, Ben-Yehudah A, Kovkarova-Naumovski E, Oriss T, Gibson KF, Feghali-Bostwick C, Kaminski N. WNT5A Is a Regulator of Fibroblast Proliferation and Resistance to Apoptosis. American Journal Of Respiratory Cell And Molecular Biology 2009, 41: 583-589. PMID: 19251946, PMCID: PMC2778165, DOI: 10.1165/rcmb.2008-0201oc.
- Zheng L, Zhou Z, Lin L, Alber S, Watkins S, Kaminski N, Choi AM, Morse D. Carbon Monoxide Modulates α–Smooth Muscle Actin and Small Proline Rich-1a Expression in Fibrosis. American Journal Of Respiratory Cell And Molecular Biology 2008, 41: 85-92. PMID: 19097987, PMCID: PMC2701963, DOI: 10.1165/rcmb.2007-0401oc.
- Kliment CR, Englert JM, Gochuico BR, Yu G, Kaminski N, Rosas I, Oury TD. Oxidative Stress Alters Syndecan-1 Distribution in Lungs with Pulmonary Fibrosis*. Journal Of Biological Chemistry 2008, 284: 3537-3545. PMID: 19073610, PMCID: PMC2635035, DOI: 10.1074/jbc.m807001200.
- Wu W, Dave NB, Yu G, Strollo PJ, Kovkarova-Naumovski E, Ryter SW, Reeves SR, Dayyat E, Wang Y, Choi AM, Gozal D, Kaminski N. Network analysis of temporal effects of intermittent and sustained hypoxia on rat lungs. Physiological Genomics 2008, 36: 24-34. PMID: 18826996, PMCID: PMC2604785, DOI: 10.1152/physiolgenomics.00258.2007.
- Zemke AC, Snyder JC, Brockway BL, Drake JA, Reynolds SD, Kaminski N, Stripp BR. Molecular Staging of Epithelial Maturation Using Secretory Cell–Specific Genes as Markers. American Journal Of Respiratory Cell And Molecular Biology 2008, 40: 340-348. PMID: 18757308, PMCID: PMC2645532, DOI: 10.1165/rcmb.2007-0380oc.
- Lin TH, Kaminski N, Bar-Joseph Z. Alignment and classification of time series gene expression in clinical studies. Bioinformatics 2008, 24: i147-i155. PMID: 18586707, PMCID: PMC2718630, DOI: 10.1093/bioinformatics/btn152.
- Lin L, Zhou Z, Zheng L, Alber S, Watkins S, Ray P, Kaminski N, Zhang Y, Morse D. Cross Talk between Id1 and Its Interactive Protein Dril1 Mediate Fibroblast Responses to Transforming Growth Factor-β in Pulmonary Fibrosis. American Journal Of Pathology 2008, 173: 337-346. PMID: 18583319, PMCID: PMC2475772, DOI: 10.2353/ajpath.2008.070915.
- Studer SM, Taioli E, Crespo M, Kaminski N. Malignancy in Lung Transplantation: Biomarkers, Gender Differences, and Consideration of a Systems Biology Approach. Transplantation 2008, 85: s69-s71. PMID: 18425041, DOI: 10.1097/tp.0b013e31816c2feb.
- Selman M, Pardo A, Kaminski N. Idiopathic Pulmonary Fibrosis: Aberrant Recapitulation of Developmental Programs? PLOS Medicine 2008, 5: e62. PMID: 18318599, PMCID: PMC2265304, DOI: 10.1371/journal.pmed.0050062.
- Dolinay T, Wu W, Kaminski N, Ifedigbo E, Kaynar AM, Szilasi M, Watkins SC, Ryter SW, Hoetzel A, Choi AM. Mitogen-Activated Protein Kinases Regulate Susceptibility to Ventilator-Induced Lung Injury. PLOS ONE 2008, 3: e1601. PMID: 18270588, PMCID: PMC2223071, DOI: 10.1371/journal.pone.0001601.
- Englert JM, Hanford LE, Kaminski N, Tobolewski JM, Tan RJ, Fattman CL, Ramsgaard L, Richards TJ, Loutaev I, Nawroth PP, Kasper M, Bierhaus A, Oury TD. A Role for the Receptor for Advanced Glycation End Products in Idiopathic Pulmonary Fibrosis. American Journal Of Pathology 2008, 172: 583-591. PMID: 18245812, PMCID: PMC2258251, DOI: 10.2353/ajpath.2008.070569.
- Yu H, Königshoff M, Jayachandran A, Handley D, Seeger W, Kaminski N, Eickelberg O. Transgelin is a direct target of TGF‐β/Smad3‐dependent epithelial cell migration in lung fibrosis. The FASEB Journal 2008, 22: 1778-1789. PMID: 18245174, DOI: 10.1096/fj.07-083857.
- Ben-Dov I, Kaminski N, Reichert N, Rosenman J, Shulimzon T. Diaphragmatic paralysis: a clinical imitator of cardiorespiratory diseases. Israel Medical Association Journal 2008, 10: 579-83. PMID: 18847154.
- Pardo A, Selman M, Kaminski N. Approaching the degradome in idiopathic pulmonary fibrosis. The International Journal Of Biochemistry & Cell Biology 2007, 40: 1141-1155. PMID: 18207447, DOI: 10.1016/j.biocel.2007.11.020.
- Novershtern N, Itzhaki Z, Manor O, Friedman N, Kaminski N. A Functional and Regulatory Map of Asthma. American Journal Of Respiratory Cell And Molecular Biology 2007, 38: 324-336. PMID: 17921359, PMCID: PMC2258452, DOI: 10.1165/rcmb.2007-0151oc.
- RadomAizik S, Kaminski N, Hayek S, Halkin H, Cooper D, BenDov I. Effects of Exercise Training on Quadriceps Muscle Gene Expression in Chronic Obstructive Pulmonary Disease. Cardiopulmonary Physical Therapy Journal 2007, 18: 26-27. DOI: 10.1097/01823246-200718030-00009.
- Feghali-Bostwick CA, Tsai CG, Valentine VG, Kantrow S, Stoner MW, Pilewski JM, Gadgil A, George MP, Gibson KF, Choi AM, Kaminski N, Zhang Y, Duncan SR. Cellular and Humoral Autoreactivity in Idiopathic Pulmonary Fibrosis. The Journal Of Immunology 2007, 179: 2592-2599. PMID: 17675522, DOI: 10.4049/jimmunol.179.4.2592.
- Navara CS, Mich‐Basso J, Redinger CJ, Ben‐Yehudah A, Jacoby E, Kovkarova‐Naumovski E, Sukhwani M, Orwig K, Kaminski N, Castro CA, Simerly CR, Schatten G. Pedigreed Primate Embryonic Stem Cells Express Homogeneous Familial Gene Profiles. Stem Cells 2007, 25: 2695-2704. PMID: 17641389, PMCID: PMC4357318, DOI: 10.1634/stemcells.2007-0286.
- Collard HR, Moore BB, Flaherty KR, Brown KK, Kaner RJ, King TE, Lasky JA, Loyd JE, Noth I, Olman MA, Raghu G, Roman J, Ryu JH, Zisman DA, Hunninghake GW, Colby TV, Egan JJ, Hansell DM, Johkoh T, Kaminski N, Kim DS, Kondoh Y, Lynch DA, Müller-Quernheim J, Myers JL, Nicholson AG, Selman M, Toews GB, Wells AU, Martinez FJ, Investigators T. Acute Exacerbations of Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2007, 176: 636-643. PMID: 17585107, PMCID: PMC2094133, DOI: 10.1164/rccm.200703-463pp.
- Selman M, Carrillo G, Estrada A, Mejia M, Becerril C, Cisneros J, Gaxiola M, Pérez-Padilla R, Navarro C, Richards T, Dauber J, King TE, Pardo A, Kaminski N. Accelerated Variant of Idiopathic Pulmonary Fibrosis: Clinical Behavior and Gene Expression Pattern. PLOS ONE 2007, 2: e482. PMID: 17534432, PMCID: PMC1868965, DOI: 10.1371/journal.pone.0000482.
- Radom-Aizik S, Kaminski N, Hayek S, Halkin H, Cooper DM, Ben-Dov I. Effects of exercise training on quadriceps muscle gene expression in chronic obstructive pulmonary disease. Journal Of Applied Physiology 2007, 102: 1976-1984. PMID: 17483440, DOI: 10.1152/japplphysiol.00577.2006.
- Raj JU, Aliferis C, Caprioli RM, Cowley AW, Davies PF, Duncan MW, Erle DJ, Erzurum SC, Finn PW, Ischiropoulos H, Kaminski N, Kleeberger SR, Leikauf GD, Loyd JE, Martin TR, Matalon S, Moore JH, Quackenbush J, Sabo-Attwood T, Shapiro SD, Schnitzer JE, Schwartz DA, Schwiebert LM, Sheppard D, Ware LB, Weiss ST, Whitsett JA, Wurfel MM, Matthay MA. Genomics and proteomics of lung disease: conference summary. American Journal Of Physiology - Lung Cellular And Molecular Physiology 2007, 293: l45-l51. PMID: 17468134, PMCID: PMC4212816, DOI: 10.1152/ajplung.00139.2007.
- Kaminski N, Bar-Joseph Z. A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies. Journal Of Computational Biology 2007, 14: 324-338. PMID: 17563314, DOI: 10.1089/cmb.2007.0001.
- Studer S, Richards T, Wu W, McCurry K, Kaminski N. 331: Gene expression profiles in peripheral blood for the noninvasive diagnosis of chronic lung allograft rejection. The Journal Of Heart And Lung Transplantation 2007, 26: s179. DOI: 10.1016/j.healun.2006.11.351.
- Dehan E, Ben-Dor A, Liao W, Lipson D, Frimer H, Rienstein S, Simansky D, Krupsky M, Yaron P, Friedman E, Rechavi G, Perlman M, Aviram-Goldring A, Izraeli S, Bittner M, Yakhini Z, Kaminski N. Chromosomal aberrations and gene expression profiles in non-small cell lung cancer. Lung Cancer 2007, 56: 175-184. PMID: 17258348, DOI: 10.1016/j.lungcan.2006.12.010.
- Studer SM, Kaminski N. Towards Systems Biology of Human Pulmonary Fibrosis. Annals Of The American Thoracic Society 2007, 4: 85-91. PMID: 17202296, PMCID: PMC2647618, DOI: 10.1513/pats.200607-139jg.
- Rosas IO, Kaminski N. When It Comes to Genes—IPF or NSIP, Familial or Sporadic—They're All the Same. American Journal Of Respiratory And Critical Care Medicine 2007, 175: 5-6. PMID: 17179494, DOI: 10.1164/rccm.200610-1415ed.
- Wang XM, Zhang Y, Kim HP, Zhou Z, Feghali-Bostwick CA, Liu F, Ifedigbo E, Xu X, Oury TD, Kaminski N, Choi AM. Caveolin-1: a critical regulator of lung fibrosis in idiopathic pulmonary fibrosis. Journal Of Experimental Medicine 2006, 203: 2895-2906. PMID: 17178917, PMCID: PMC1850940, DOI: 10.1084/jem.20061536.
- Patel S, Choi A, Zhang Y, Kaminski N, Lokshin A, Weissfeld J, Sciurba F. Systemic Biomarker Pattern in Different Chronic Obstructive Pulmonary Disease Phenotypes Independent of Smoking Status. Annals Of The American Thoracic Society 2006, 3: 551-551. DOI: 10.1513/pats.200603-083ms.
- Ning W, Lee J, Kaminski N, Feghali-Bostwick CA, Watkins SC, Pilewski JM, Peters DG, Hogg JC, Choi AM. Comprehensive Analysis of Gene Expression on GOLD-2 Versus GOLD-0 Smokers Reveals Novel Genes Important in the Pathogenesis of COPD. Annals Of The American Thoracic Society 2006, 3: 466-466. PMID: 16921106, DOI: 10.1513/pats.200603-031ms.
- Dekel B, Metsuyanim S, Schmidt-Ott KM, Fridman E, Jacob-Hirsch J, Simon A, Pinthus J, Mor Y, Barasch J, Amariglio N, Reisner Y, Kaminski N, Rechavi G. Multiple Imprinted and Stemness Genes Provide a Link between Normal and Tumor Progenitor Cells of the Developing Human Kidney. Cancer Research 2006, 66: 6040-6049. PMID: 16778176, DOI: 10.1158/0008-5472.can-05-4528.
- Lindell KO, Erlen JA, Kaminski N. Lessons from Our Patients: Development of a Warm Autopsy Program. PLOS Medicine 2006, 3: e234. PMID: 16724871, PMCID: PMC1472556, DOI: 10.1371/journal.pmed.0030234.
- Kaminski N, Rosas IO. Gene Expression Profiling as a Window into Idiopathic Pulmonary Fibrosis Pathogenesis. Annals Of The American Thoracic Society 2006, 3: 339-344. PMID: 16738198, PMCID: PMC2658685, DOI: 10.1513/pats.200601-011tk.
- Dolinay T, Kaminski N, Felgendreher M, Kim HP, Reynolds P, Watkins SC, Karp D, Uhlig S, Choi AM. Gene expression profiling of target genes in ventilator-induced lung injury. Physiological Genomics 2006, 26: 68-75. PMID: 16569776, DOI: 10.1152/physiolgenomics.00110.2005.
- Oury T, Hanford L, Kaminski N, Fattman C, Tan R, Tobloewski J, Kasper M, Bierhaus A. RAGE: A beneficial role in pulmonary fibrosis. The FASEB Journal 2006, 20: a213-a213. DOI: 10.1096/fasebj.20.4.a213.
- Shalev A, Segman R, Friedman N, Kaminski N, Sheffi N, Goltser-Dubner T. S.16.04 Peripheral gene expression in PTSD. European Neuropsychopharmacology 2006, 16: s188. DOI: 10.1016/s0924-977x(06)70081-5.
- Kaminski N, Bar-Joseph Z. A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies. Lecture Notes In Computer Science 2006, 3909: 69-82. DOI: 10.1007/11732990_6.
- Wu W, Dave N, Tseng GC, Richards T, Xing EP, Kaminski N. Comparison of normalization methods for CodeLink Bioarray data. BMC Bioinformatics 2005, 6: 309. PMID: 16381608, PMCID: PMC1373657, DOI: 10.1186/1471-2105-6-309.
- Gagermeier J, Dauber J, Yousem S, Gibson K, Kaminski N. Abnormal Vascular Phenotypes in Patients With Idiopathic Pulmonary Fibrosis and Secondary Pulmonary Hypertension. CHEST Journal 2005, 128: 601s. PMID: 16373857, DOI: 10.1378/chest.128.6_suppl.601s.
- Stanhill A, Levin V, Hendel A, Shachar I, Kazanov D, Arber N, Kaminski N, Engelberg D. Ha-rasval12 induces HSP70b transcription via the HSE/HSF1 system, but HSP70b expression is suppressed in Ha-rasval12-transformed cells. Oncogene 2005, 25: 1485-1495. PMID: 16278678, DOI: 10.1038/sj.onc.1209193.
- RADOM-AIZIK S, HAYEK S, SHAHAR I, RECHAVI G, KAMINSKI N, BEN-DOV I. Effects of Aerobic Training on Gene Expression in Skeletal Muscle of Elderly Men. Medicine & Science In Sports & Exercise 2005, 37: 1680-1696. PMID: 16260967, DOI: 10.1249/01.mss.0000181838.96815.4d.
- Gene Expression Profiles Distinguish Idiopathic Pulmonary Fibrosis from Hypersensitivity PneumonitisSelman M, Pardo A, Barrera L, Estrada A, Watson SR, Wilson K, Aziz N, Kaminski N, Zlotnik A. Gene Expression Profiles Distinguish Idiopathic Pulmonary Fibrosis from Hypersensitivity Pneumonitis. American Journal Of Respiratory And Critical Care Medicine 2005, 173: 188-198. PMID: 16166619, PMCID: PMC2662988, DOI: 10.1164/rccm.200504-644oc.
- Pardo A, Gibson K, Cisneros J, Richards TJ, Yang Y, Becerril C, Yousem S, Herrera I, Ruiz V, Selman M, Kaminski N. Up-Regulation and Profibrotic Role of Osteopontin in Human Idiopathic Pulmonary Fibrosis. PLOS Medicine 2005, 2: e251. PMID: 16128620, PMCID: PMC1198037, DOI: 10.1371/journal.pmed.0020251.
- Segal E, Friedman N, Kaminski N, Regev A, Koller D. From signatures to models: understanding cancer using microarrays. Nature Genetics 2005, 37: s38-s45. PMID: 15920529, DOI: 10.1038/ng1561.
- Radom-Aizik S, Hayek S, Rechavi G, Amariglio N, Halkin H, Kaminski N, Ben-Dov I. Training Reverses Age-Related Gene Expression Changes In Skeletal Muscle Of Elderly Men. Medicine & Science In Sports & Exercise 2005, 37: s243. DOI: 10.1097/00005768-200505001-01259.
- Radom-Aizik S, Hayek S, Rechavi G, Amariglio N, Halkin H, Kaminski N, Ben-Dov I. Training Reverses Age-Related Gene Expression Changes In Skeletal Muscle Of Elderly Men. Medicine & Science In Sports & Exercise 2005, 37: s243. DOI: 10.1249/00005768-200505001-01259.
- Segman R, Shefi N, Goltser-Dubner T, Friedman N, Kaminski N, Shalev A. Erratum: Peripheral blood mononuclear cell gene expression profiles identify emergent post-traumatic stress disorder among trauma survivors. Molecular Psychiatry 2005, 10: 514-514. DOI: 10.1038/sj.mp.4001654.
- Segman R, Shefi N, Goltser-Dubner T, Friedman N, Kaminski N, Shalev A. Peripheral blood mononuclear cell gene expression profiles identify emergent post-traumatic stress disorder among trauma survivors. Molecular Psychiatry 2005, 10: 425-425. DOI: 10.1038/sj.mp.4001676.
- Can Blood Gene Expression Predict Which Patients with Multiple Sclerosis Will Respond to Interferon?Kaminski N, Achiron A. Can Blood Gene Expression Predict Which Patients with Multiple Sclerosis Will Respond to Interferon? PLOS Medicine 2005, 2: e33. PMID: 15736992, PMCID: PMC549584, DOI: 10.1371/journal.pmed.0020033.
- Segman RH, Shefi N, Goltser-Dubner T, Friedman N, Kaminski N, Shalev AY. Peripheral blood mononuclear cell gene expression profiles identify emergent post-traumatic stress disorder among trauma survivors. Molecular Psychiatry 2005, 10: 500-513. PMID: 15685253, DOI: 10.1038/sj.mp.4001636.
- Davé NB, Kaminski N. Analysis of Microarray Experiments for Pulmonary Fibrosis. Methods In Molecular Medicine 2005, 117: 333-358. PMID: 16118461, DOI: 10.1385/1-59259-940-0:333.
- Blundell R, Kaminski N, Harrison D. Increase in p21 expression independent of the p53 pathway in bleomycin-induced lung fibrosis. Experimental And Molecular Pathology 2004, 77: 231-237. PMID: 15507241, DOI: 10.1016/j.yexmp.2004.07.003.
- Ning W, Li CJ, Kaminski N, Feghali-Bostwick CA, Alber SM, Di YP, Otterbein SL, Song R, Hayashi S, Zhou Z, Pinsky DJ, Watkins SC, Pilewski JM, Sciurba FC, Peters DG, Hogg JC, Choi AM. Comprehensive gene expression profiles reveal pathways related to the pathogenesis of chronic obstructive pulmonary disease. Proceedings Of The National Academy Of Sciences Of The United States Of America 2004, 101: 14895-14900. PMID: 15469929, PMCID: PMC522001, DOI: 10.1073/pnas.0401168101.
- Gibson K, Kaminski N. The mechanisms of idiopathic pulmonary fibrosis: can we see the elephant? Drug Discovery Today Disease Mechanisms 2004, 1: 117-122. DOI: 10.1016/j.ddmec.2004.08.002.
- RadomAizik S, Kaminski N, Hayek S, Halkin H, Cooper D, BenDov I. Effects of Exercise Training on Quadriceps Muscle Gene Expression in Chronic Obstructive Pulmonary Disease. Cardiopulmonary Physical Therapy Journal 2004, 18: 26-27. DOI: 10.1097/01823246-200418030-00009.
- MANDEL M, GUREVICH M, PAUZNER R, KAMINSKI N, ACHIRON A. Autoimmunity gene expression portrait: specific signature that intersects or differentiates between multiple sclerosis and systemic lupus erythematosus. Clinical & Experimental Immunology 2004, 138: 164-170. PMID: 15373920, PMCID: PMC1809188, DOI: 10.1111/j.1365-2249.2004.02587.x.
- Whitsett J, Bachurski C, Barnes K, Bunn P, Case L, Cook D, Crooks D, Duncan M, Dwyer-Nield L, Elston R, Fessler M, Franklin W, Friedman N, Garcia J, Geraci M, Glasgow C, Glasser S, Hardie W, Henning L, Johnson G, Kawkitinarong K, Keith R, Korfhagen T, Leikauf G, Liggett S, Malcolm K, Malkinson A, Mariani T, McDowell S, McGraw D, Medvedovic M, Moss J, Nogee L, Nonas S, Pacheco-Rodriguez G, Palmer L, Peters D, Prows D, Redline S, Regev A, Sartor M, Schwartz D, Silverman E, Steagall W, Stearman R, Taveira-DaSilva A, Tichelaar J, Tomlinson C, Tsukada K, Weaver T, Wert S, Wesselkamper S, Worthen G, Xu Y, Zerbe L, Zhang Y, Zhang Y, Choi A, Kaminski N. Functional Genomics of Lung Disease. American Journal Of Respiratory Cell And Molecular Biology 2004, 31: s1-s81. PMID: 15269003, DOI: 10.1165/rcmb.2004-0071su.
- Dauber JH, Gibson KF, Kaminski N. Interferon-γ 1b in Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2004, 170: 107-108. PMID: 15242850, DOI: 10.1164/rccm.2405001.
- Enk CD, Shahar I, Amariglio N, Rechavi G, Kaminski N, Hochberg M. Gene expression profiling of in vivo UVB‐irradiated human epidermis. Photodermatology Photoimmunology & Photomedicine 2004, 20: 129-137. PMID: 15144390, DOI: 10.1111/j.1600-0781.2004.00097.x.
- Kaminski N, Krupsky M. Gene Expression Patterns, Prognostic and Diagnostic Markers, and Lung Cancer Biology. CHEST Journal 2004, 125: 111s-115s. PMID: 15136452, DOI: 10.1378/chest.125.5_suppl.111s-a.
- Erez A, Perelman M, Hewitt SM, Cojacaru G, Goldberg I, Shahar I, Yaron P, Muler I, Campaner S, Amariglio N, Rechavi G, Kirsch IR, Krupsky M, Kaminski N, Izraeli S. Sil overexpression in lung cancer characterizes tumors with increased mitotic activity. Oncogene 2004, 23: 5371-5377. PMID: 15107824, DOI: 10.1038/sj.onc.1207685.
- Achiron A, Gurevich M, Friedman N, Kaminski N, Mandel M. Blood transcriptional signatures of multiple sclerosis: Unique gene expression of disease activity. Annals Of Neurology 2004, 55: 410-417. PMID: 14991819, DOI: 10.1002/ana.20008.
- Barash Y, Dehan E, Krupsky M, Franklin W, Geraci M, Friedman N, Kaminski N. Comparative analysis of algorithms for signal quantitation from oligonucleotide microarrays. Bioinformatics 2004, 20: 839-846. PMID: 14751998, DOI: 10.1093/bioinformatics/btg487.
- Mariani TJ, Kaminski N. Gene Expression Studies in Lung Development and Lung Stem Cell Biology. Current Topics In Developmental Biology 2004, 64: 57-71. PMID: 15563944, DOI: 10.1016/s0070-2153(04)64004-x.
- Kaminski N, Belperio J, Bitterman P, Chen L, Chensue S, Choi A, Dacic S, Dauber J, du Bois R, Enghild J, Fattman C, Grutters J, Haegens A, Hanford L, Heintz N, Henson P, Hogaboam C, Kagan V, Keane M, Kunkel S, Land S, Loyd J, Lukacs N, MacPherson M, Manning B, Manning N, Martinelli M, Moller D, Morse D, Mossman B, Noble P, Nowak N, Oury T, Pardo A, Perez A, Petty T, Phan S, Ramos-Nino M, Ray P, Rogers R, Sato H, Scapoli L, Schaefer L, Selman M, Stern M, Strollo D, Tyurin V, Valnickova Z, Welsh K, Witzmann F, Yousem S, Strieter R. Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory Cell And Molecular Biology 2003, 29: s1-s105. PMID: 12936907, DOI: 10.1165/rcmb.2003-0159su.
- Kaminski N. Microarray analysis of idiopathic pulmonary fibrosis. American Journal Of Respiratory Cell And Molecular Biology 2003, 29: s32-6. PMID: 14503551.
- Margalit O, Eisenbach L, Amariglio N, Kaminski N, Harmelin A, Pfeffer R, Shohat M, Rechavi G, Berger R. Overexpression of a set of genes, including WISP-1, common to pulmonary metastases of both mouse D122 Lewis lung carcinoma and B16-F10.9 melanoma cell lines. British Journal Of Cancer 2003, 89: 314-319. PMID: 12865923, PMCID: PMC2394268, DOI: 10.1038/sj.bjc.6600977.
- Ortiz LA, Gambelli F, McBride C, Gaupp D, Baddoo M, Kaminski N, Phinney DG. Mesenchymal stem cell engraftment in lung is enhanced in response to bleomycin exposure and ameliorates its fibrotic effects. Proceedings Of The National Academy Of Sciences Of The United States Of America 2003, 100: 8407-8411. PMID: 12815096, PMCID: PMC166242, DOI: 10.1073/pnas.1432929100.
- Morris DG, Huang X, Kaminski N, Wang Y, Shapiro SD, Dolganov G, Glick A, Sheppard D. Loss of integrin αvβ6-mediated TGF-β activation causes Mmp12-dependent emphysema. Nature 2003, 422: 169-173. PMID: 12634787, DOI: 10.1038/nature01413.
- Chambers RC, Leoni P, Kaminski N, Laurent GJ, Heller RA. Global Expression Profiling of Fibroblast Responses to Transforming Growth Factor-β1 Reveals the Induction of Inhibitor of Differentiation-1 and Provides Evidence of Smooth Muscle Cell Phenotypic Switching. American Journal Of Pathology 2003, 162: 533-546. PMID: 12547711, PMCID: PMC1851161, DOI: 10.1016/s0002-9440(10)63847-3.
- Dekel B, Burakova T, Arditti FD, Reich-Zeliger S, Milstein O, Aviel-Ronen S, Rechavi G, Friedman N, Kaminski N, Passwell JH, Reisner Y. Human and porcine early kidney precursors as a new source for transplantation. Nature Medicine 2002, 9: 53-60. PMID: 12496960, DOI: 10.1038/nm812.
- Kaminski N, Friedman N. Practical Approaches to Analyzing Results of Microarray Experiments. American Journal Of Respiratory Cell And Molecular Biology 2002, 27: 125-132. PMID: 12151303, DOI: 10.1165/ajrcmb.27.2.f247.
- Lock C, Hermans G, Pedotti R, Brendolan A, Schadt E, Garren H, Langer-Gould A, Strober S, Cannella B, Allard J, Klonowski P, Austin A, Lad N, Kaminski N, Galli SJ, Oksenberg JR, Raine CS, Heller R, Steinman L. Gene-microarray analysis of multiple sclerosis lesions yields new targets validated in autoimmune encephalomyelitis. Nature Medicine 2002, 8: 500-508. PMID: 11984595, DOI: 10.1038/nm0502-500.
- Dekel B, Amariglio N, Kaminski N, Schwartz A, Goshen E, Arditti FD, Tsarfaty I, Passwell JH, Reisner Y, Rechavi G. Engraftment and differentiation of human metanephroi into functional mature nephrons after transplantation into mice is accompanied by a profile of gene expression similar to normal human kidney development. Journal Of The American Society Of Nephrology 2002, 13: 977-990. PMID: 11912257, DOI: 10.1681/asn.v134977.
- Kaminski N. Use of Oligonucleotide Microarrays to Analyze Gene Expression Patterns in Pulmonary Fibrosis Reveals Distinct Patterns of Gene Expression in Mice and Humans. CHEST Journal 2002, 121: 31s-a-32. DOI: 10.1378/chest.121.3_suppl.31s-a.
- Cojocaru G, Friedman N, Krupsky M, Yaron P, Simansky D, Yellin A, Rechavi G, Barash Y, Ben-Dor A, Yakhini Z, Kaminski N. Transcriptional Profiling of Non-small Cell Lung Cancer Using Oligonucleotide Microarrays. CHEST Journal 2002, 121: 44s. PMID: 11893681, DOI: 10.1378/chest.121.3_suppl.44s.
- Kaminski N, Zuo F, Cojocaro G, Yakhini Z, Ben-Dor A, Morris D, Sheppard D, Pardo A, Selman M, Heller RA. Use of Oligonucleotide Microarrays to Analyze Gene Expression Patterns in Pulmonary Fibrosis Reveals Distinct Patterns of Gene Expression in Mice and Humans. CHEST Journal 2002, 121: 31s-32s. PMID: 11893671, DOI: 10.1378/chest.121.3_suppl.31s.
- Hwang J, Yen D, Shahar I, Rennick D, Donaldson D, Kaminski N, Grunig G. Lung inflammation induced by mixed T cell responses: Critical mediators. Journal Of Allergy And Clinical Immunology 2002, 109: s317. DOI: 10.1016/s0091-6749(02)82112-1.
- Friedman N, Kaminski N. Statistical Methods for Analyzing Gene Expression Data for Cancer Research. Ernst Schering Foundation Symposium Proceedings 2002, 109-131. PMID: 12060998, DOI: 10.1007/978-3-662-04747-7_6.
- Lee J, Kaminski N, Dolganov G, Grunig G, Koth L, Solomon C, Erle D, Sheppard D. Interleukin-13 Induces Dramatically Different Transcriptional Programs in Three Human Airway Cell Types. American Journal Of Respiratory Cell And Molecular Biology 2001, 25: 474-485. PMID: 11694453, DOI: 10.1165/ajrcmb.25.4.4522.
- Pittet J, Griffiths M, Geiser T, Kaminski N, Dalton S, Huang X, Brown L, Gotwals P, Koteliansky V, Matthay M, Sheppard D. TGF-β is a critical mediator of acute lung injury. Journal Of Clinical Investigation 2001, 107: 1537-1544. PMID: 11413161, PMCID: PMC200192, DOI: 10.1172/jci11963.
- Kannan K, Kaminski N, Rechavi G, Jakob-Hirsch J, Amariglio N, Givol D. DNA microarray analysis of genes involved in p53 mediated apoptosis: activation of Apaf-1. Oncogene 2001, 20: 3449-3455. PMID: 11423996, DOI: 10.1038/sj.onc.1204446.
- Kannan K, Amariglio N, Rechavi G, Jakob-Hirsch J, Kela I, Kaminski N, Getz G, Domany E, Givol D. DNA microarrays identification of primary and secondary target genes regulated by p53. Oncogene 2001, 20: 2225-2234. PMID: 11402317, DOI: 10.1038/sj.onc.1204319.
- Kannan K, Amariglio N, Rechavi G, Yaakov Y, Kaminski N, Getz G, Domany E, Givol D. Primary and secondary target genes regulated by p53 identified by DNA microarrays. Nature Genetics 2001, 27: 63-63. DOI: 10.1038/87146.
- Kaminski N, Pilzer D, Cojocaru G, Margalit O, Friedman N, Reinstein S, Simansky D, Yaron P, Ninnete A, Yellin A, Rechavi G, Friedman E, Krupsky M. A composite genomic profile of lung cancer in smokers and nonsmokers. Nature Genetics 2001, 27: 63-63. DOI: 10.1038/87144.
- Cojocaru GS, Rechavi G, Kaminski N. The use of microarrays in medicine. Israel Medical Association Journal 2001, 3: 292-6. PMID: 11344848.
- Kaminski N. Bioinformatics. American Journal Of Respiratory Cell And Molecular Biology 2000, 23: 705-711. PMID: 11104721, DOI: 10.1165/ajrcmb.23.6.4291.
- Nissan A, Shaham D, Kaminski N, Bar-Ziv J. Inferior vena cava (pseudo)thrombus: computed tomographic artifact occurring with right heart failure and tricuspid incompetence. Israel Medical Association Journal 2000, 2: 859-61. PMID: 11344759.
- KAMINSKI N, ALLARD J, HELLER R. Use of Oligonucleotide Arrays to Analyze Drug Toxicity. Annals Of The New York Academy Of Sciences 2000, 919: 1-8. PMID: 11083091, DOI: 10.1111/j.1749-6632.2000.tb06861.x.
- Kaminski N, Allard J, Pittet J, Zuo F, Griffiths M, Morris D, Huang X, Sheppard D, Heller R. Global analysis of gene expression in pulmonary fibrosis reveals distinct programs regulating lung inflammation and fibrosis. Proceedings Of The National Academy Of Sciences Of The United States Of America 2000, 97: 1778-1783. PMID: 10677534, PMCID: PMC26512, DOI: 10.1073/pnas.97.4.1778.
- Munger J, Huang X, Kawakatsu H, Griffiths M, Dalton S, Wu J, Pittet J, Kaminski N, Garat C, Matthay M, Rifkin D, Sheppard D. A Mechanism for Regulating Pulmonary Inflammation and Fibrosis: The Integrin αvβ6 Binds and Activates Latent TGF β1. Cell 1999, 96: 319-328. PMID: 10025398, DOI: 10.1016/s0092-8674(00)80545-0.
- Kreiss Y, Schwartz E, Kaminski N, Raanani P, Schiby G, Zvas Z, Sidi Y. Unique pulmonary presentation of intravascular large cell lymphoma. Respiratory Medicine 1998, 92: 1087-1089. PMID: 9893783, DOI: 10.1016/s0954-6111(98)90362-6.
- Amitai M, Kaminski N, Simanski D, Sachs N, Amital H. [Bronchogenic cyst]. Harefuah 1997, 132: 308-9. PMID: 9153907.
- Schwaber M, Lossos I, Goldberg Y, Jaffe R, Kaminski N. Right-Sided Endocarditis Due to Staphylococcus aureus. Infectious Diseases In Clinical Practice 1995, 4: 453-455. DOI: 10.1097/00019048-199511000-00023.
- Kaminski N, Lossos IS, Breuer R. [Nitric oxide in the respiratory system]. Harefuah 1995, 128: 173-5. PMID: 7759010.
- Kaminski N, Lossos IS, Ben-Sira L, Laxer U, Jaffe R. Flank pain as a presentation of pulmonary embolism. Respiratory Medicine 1995, 89: 65-66. PMID: 7708985, DOI: 10.1016/0954-6111(95)90075-6.
- Heyman SN, Kaminski N, Brezis M. Dopamine increases renal medullary blood flow without improving regional hypoxia. Experimental Nephrology 1995, 3: 331-7. PMID: 8528677.
- Kaminski N, Bogomolski V, Stalnikowicz R. Acute bacterial diarrhoea in the emergency room: therapeutic implications of stool culture results. Emergency Medicine Journal 1994, 11: 168. PMID: 7804582, PMCID: PMC1342424, DOI: 10.1136/emj.11.3.168.
- Fuchs S, Kaminski N, Brezis M. Drug Points: Metabolic abnormality induced by streptomycin. The BMJ 1994, 309: 512. PMID: 8086909, PMCID: PMC2542719, DOI: 10.1136/bmj.309.6953.512.
- Carmeli Y, Mevorach D, Kaminski N, Raz E. Regression of Kaposi's sarcoma after intravenous immunoglobulin treatment for polymyositis. Cancer 1994, 73: 2859-2861. PMID: 8194027, DOI: 10.1002/1097-0142(19940601)73:11<2859::aid-cncr2820731132>3.0.co;2-p.
- Kaminski N, Shaham D, Eliakim R. Primary tumours of the duodenum. Postgraduate Medical Journal 1993, 69: 136-138. PMID: 8506195, PMCID: PMC2399609, DOI: 10.1136/pgmj.69.808.136.
- Raz E, Kaminski N, Brezis M. Effects of Perfusion Pressure and Renal Flow upon Albumin Excretion in Isolated Perfused Kidneys. Nephron 1990, 56: 396-398. PMID: 2079998, DOI: 10.1159/000186182.
Biography
Naftali Kaminski, MD, chief of Yale Medicine Pulmonary, Critical Care and Sleep Medicine, is a leader in improving the understanding and treatment of chronic lung diseases. He has a particular interest in idiopathic pulmonary fibrosis, a disease characterized by progressive scarring of the lungs, and in chronic obstructive pulmonary disease and asthma.
Dr. Kaminski leads the Kaminski Lab at Yale School of Medicine, where researchers apply cutting-edge technologies that measure changes in the sequence, expression or regulation of all the genes in the human genome in efforts to learn more about the roles of genome networks and biomarkers in chronic lung disease.
“Pulmonary fibrosis was an understudied and poorly understood disease, with high mortality and morbidity,” says Dr. Kaminiski, who is a professor of medicine (pulmonary) at Yale School of Medicine “I thought that by shifting the focus to human
relevant pathways and mechanisms we can have an impact, and we have.”
Titles
- Boehringer Ingelheim Pharmaceuticals, Inc. Professor of Medicine (Pulmonary)
- Section Chief, Pulmonary, Critical Care & Sleep Medicine
Education & Training
- MDHebrew University (1989)
- BMHebrew University (1985)
Languages Spoken
- English
- עברית (Hebrew)
- ייִדיש (Yiddish)
Additional Information
Honors & Recognitions
- J. Burns Amberson Honorary Award Lecture : American Thoracic Society (2022)
- Blavatnic Fund Innovation Award: (2019)
- Andy Tager Excellence in Mentorship Award: The American Thoracic Society Respiratory Cell and Molecular Biology Assembly (2018)
- Fellow: American Thoracic Society (2018)
- Fellow: European Respiratory Society (2016)
- Gold Medal for Interstitial Lung Disease: European Respiratory Society (2016)
- Member of the Association of American Physicians: (2015)
- Helmholtz International Fellow Award: Helmholtz Institute (2013)
- Recognition for Scientific Achievement: American Thoracic Society (2013)
- Innovator Award: University Of Pittsburgh (2012)
Professional Service
- Yale School of Medicine Diversity Supplement Working Group (2021 - Present): Member
- American Thoracic Society Physician Scientist Forum (2019): Chair
- American Thoracic Society Workshop on Single Cell (2019): Co-Chair
- LungAging Consortium (2019 - Present): Committee Member
- Boehringer-Ingelheim Discovery Award (2019 - Present): Scientific Committee
- Three Lake Partners (2019 - Present): Chair of Scientific Advisory Committee
- Time Banking System Steering Committee (2018 - Present): Member
- Yale School of Medicine Admissions Committee (2018 - Present): Member
- American Thoracic Society (2018 - Present): Fellow
- Yale School of Medicine Faculty Engagement Committee (2017 - 2019): Member
Publications
- Chioccioli M, Roy S, Newell R, Pestano L, Dickinson B, Rigby K, Herazo-Maya J, Jenkins G, Ian S, Saini G, Johnson SR, Braybrooke R, Yu G, Sauler M, Ahangari F, Ding S, DeIuliis J, Aurelien N, Montgomery RL, Kaminski N. A lung targeted miR-29 mimic as a therapy for pulmonary fibrosis. EBioMedicine 2022, 85: 104304. PMID: 36265417, PMCID: PMC9587275, DOI: 10.1016/j.ebiom.2022.104304.
- Schupp JC, Adams TS, Cosme C, Raredon MSB, Yuan Y, Omote N, Poli S, Chioccioli M, Rose KA, Manning EP, Sauler M, DeIuliis G, Ahangari F, Neumark N, Habermann AC, Gutierrez AJ, Bui LT, Lafyatis R, Pierce RW, Meyer KB, Nawijn MC, Teichmann SA, Banovich NE, Kropski JA, Niklason LE, Pe’er D, Yan X, Homer RJ, Rosas IO, Kaminski N. Integrated Single-Cell Atlas of Endothelial Cells of the Human Lung. Circulation 2021, 144: 286-302. PMID: 34030460, PMCID: PMC8300155, DOI: 10.1161/circulationaha.120.052318.
- Yu G, Tzouvelekis A, Wang R, Herazo-Maya JD, Ibarra GH, Srivastava A, de Castro JPW, DeIuliis G, Ahangari F, Woolard T, Aurelien N, Arrojo e Drigo R, Gan Y, Graham M, Liu X, Homer RJ, Scanlan TS, Mannam P, Lee PJ, Herzog EL, Bianco AC, Kaminski N. Thyroid hormone inhibits lung fibrosis in mice by improving epithelial mitochondrial function. Nature Medicine 2017, 24: 39-49. PMID: 29200204, PMCID: PMC5760280, DOI: 10.1038/nm.4447.
- Ahangari F, Price N, Malik S, Chioccioli M, Bärnthaler T, Adams T, Kim J, Pradeep S, Ding S, Cosme C, Rose K, McDonough J, Aurelien N, Ibarra G, Omote N, Schupp J, DeIuliis G, Nunez J, Sharma L, Ryu C, Dela Cruz C, Liu X, Prasse A, Rosas I, Bahal R, Fernandez-Hernando C, Kaminski N. microRNA-33 deficiency in macrophages enhances autophagy, improves mitochondrial homeostasis, and protects against lung fibrosis. JCI Insight 2023, 8: e158100. PMID: 36626225, PMCID: PMC9977502, DOI: 10.1172/jci.insight.158100.
- Adams TS, Schupp JC, Poli S, Ayaub EA, Neumark N, Ahangari F, Chu SG, Raby BA, DeIuliis G, Januszyk M, Duan Q, Arnett HA, Siddiqui A, Washko GR, Homer R, Yan X, Rosas IO, Kaminski N. Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis. Science Advances 2020, 6: eaba1983. PMID: 32832599, PMCID: PMC7439502, DOI: 10.1126/sciadv.aba1983.
- Zhao A, Unterman A, Abu Hussein N, Sharma P, Nikola F, Flint J, Yan X, Adams T, Justet A, Sumida T, Zhao J, Schupp J, Raredon M, Ahangari F, Deluliis G, Zhang Y, Buendia-Roldan I, Adegunsoye A, Sperling A, Prasse A, Ryu C, Herzog E, Selman M, Pardo A, Kaminski N. Single-Cell Analysis Reveals Novel Immune Perturbations in Fibrotic Hypersensitivity Pneumonitis. American Journal Of Respiratory And Critical Care Medicine 2024, 210: 1252-1266. PMID: 38924775, PMCID: PMC11568434, DOI: 10.1164/rccm.202401-0078oc.
- Zuo F, Kaminski N, Eugui E, Allard J, Yakhini Z, Ben-Dor A, Lollini L, Morris D, Kim Y, DeLustro B, Sheppard D, Pardo A, Selman M, Heller RA. Gene expression analysis reveals matrilysin as a key regulator of pulmonary fibrosis in mice and humans. Proceedings Of The National Academy Of Sciences Of The United States Of America 2002, 99: 6292-6297. PMID: 11983918, PMCID: PMC122942, DOI: 10.1073/pnas.092134099.
- Rosas IO, Richards TJ, Konishi K, Zhang Y, Gibson K, Lokshin AE, Lindell KO, Cisneros J, MacDonald SD, Pardo A, Sciurba F, Dauber J, Selman M, Gochuico BR, Kaminski N. MMP1 and MMP7 as Potential Peripheral Blood Biomarkers in Idiopathic Pulmonary Fibrosis. PLOS Medicine 2008, 5: e93. PMID: 18447576, PMCID: PMC2346504, DOI: 10.1371/journal.pmed.0050093.
- Pandit KV, Corcoran D, Yousef H, Yarlagadda M, Tzouvelekis A, Gibson KF, Konishi K, Yousem SA, Singh M, Handley D, Richards T, Selman M, Watkins SC, Pardo A, Ben-Yehudah A, Bouros D, Eickelberg O, Ray P, Benos PV, Kaminski N. Inhibition and Role of let-7d in Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2010, 182: 220-229. PMID: 20395557, PMCID: PMC2913236, DOI: 10.1164/rccm.200911-1698oc.
- Kurbanov D, Ahangari F, Adams T, De Man R, Tang J, Carlon M, Abu Hussein N, Cortesi E, Zapata M, De Sadelaar L, Wuyts W, Vanaudenaerde B, Kaminski N, McDonough J. Epigenetic age acceleration in idiopathic pulmonary fibrosis revealed by DNA methylation clocks. American Journal Of Physiology - Lung Cellular And Molecular Physiology 2025, 328: l456-l462. PMID: 39970931, DOI: 10.1152/ajplung.00171.2024.
- Carter H, Costa R, Adams T, Gilchrist T, Emch C, Bame M, Oldham J, Huang S, Linderholm A, Noth I, Kaminski N, Moore B, Gurczynski S. CD103+ dendritic cell — fibroblast crosstalk via TLR9, TDO2, and AHR signaling drives lung fibrogenesis. JCI Insight 2025, 10 PMID: 39964756, PMCID: PMC11949071, DOI: 10.1172/jci.insight.177072.
- De Man R, Adams T, McDonough J, Cala-Garcia J, Moss B, Yan X, Rosas I, Kaminski N. SINGLE-CELL ANALYSIS OF SOMATIC MUTATIONS IN HUMAN LUNG REVEALS ASSOCIATION WITH TRANSCRIPTIONAL CHANGES IN AGING. Innovation In Aging 2024, 8: 571-572. PMCID: PMC11690935, DOI: 10.1093/geroni/igae098.1872.
- Song Q, Singh A, McDonough J, Adams T, Vos R, De Man R, Myers G, Ceulemans L, Vanaudenaerde B, Wuyts W, Yan X, Schupp J, Hagood J, Kaminski N, Bar-Joseph Z. Predicting lung aging using scRNA-Seq data. PLOS Computational Biology 2024, 20: e1012632. PMID: 39700255, PMCID: PMC11741621, DOI: 10.1371/journal.pcbi.1012632.
- Lehmann M, Krishnan R, Sucre J, Kulkarni H, Pineda R, Anderson C, Banovich N, Behrsing H, Dean C, Haak A, Gosens R, Kaminski N, Zagorska A, Koziol-White C, Metcalf J, Kim Y, Loebel C, Neptune E, Noel A, Raghu G, Sewald K, Sharma A, Suki B, Sperling A, Tatler A, Turner S, Rosas I, van Ry P, Wille T, Randell S, Pryhuber G, Rojas M, Bourke J, Königshoff M. Precision-Cut Lung Slices: Emerging Tools for Preclinical and Translational Lung Research: An Official American Thoracic Society Workshop Report. American Journal Of Respiratory Cell And Molecular Biology 2024, 72: 16-31. PMID: 39499861, PMCID: PMC11707673, DOI: 10.1165/rcmb.2024-0479st.
- Liu Y, Li N, Qi J, Xu G, Zhao J, Wang N, Huang X, Jiang W, Wei H, Justet A, Adams T, Homer R, Amei A, Rosas I, Kaminski N, Wang Z, Yan X. SDePER: a hybrid machine learning and regression method for cell-type deconvolution of spatial barcoding-based transcriptomic data. Genome Biology 2024, 25: 271. PMID: 39402626, PMCID: PMC11475911, DOI: 10.1186/s13059-024-03416-2.
- LEE C, TRUJILLO G, REGUEIRO-REN A, LIU C, HU B, SUN Y, KHOURY J, KHOURY J, AHANGARI F, ISHIKAWA G, WALIA A, PIVARNIK T, YU S, WOO S, FIORINI V, MCGOVERN J, AL JUMAILY K, SUN H, PENG X, ANTIN-OZERKIS D, SAULER M, KAMINSKI N, HERZOG E. INTERACTIONS BETWEEN MITOCHONDRIAL DNA AND TOLL-LIKE RECEPTOR 9 MEDIATES PULMONARY FIBROSIS. CHEST Journal 2024, 166: a3384-a3386. DOI: 10.1016/j.chest.2024.06.2020.
- Ruwisch J, Schupp J, Bartkute B, Artysh N, Kaminski N, Prasse A. Dissecting the immune cell niche in pulmonary sarcoidosis – CXCL10+ monocyte-derived macrophages are potential drivers of TH17.1 inflammation. 2024, oa953. DOI: 10.1183/13993003.congress-2024.oa953.
- Leiber L, Christian L, Neubert L, Yilmaz H, Kamp J, Plucinski E, Welte T, Falk C, Kaminski N, Jonigk* D, Gottlieb* J, Schupp* J. Single-nuclei RNA-seq reveals aberrant cell populations in restrictive allograft syndrome after lung transplantation. 2024, oa985. DOI: 10.1183/13993003.congress-2024.oa985.
- Auld S, Sheshadri A, Alexander-Brett J, Aschner Y, Barczak A, Basil M, Cohen K, Dela Cruz C, McGroder C, Restrepo M, Ridge K, Schnapp L, Traber K, Wunderink R, Zhang D, Ziady A, Attia E, Carter J, Chalmers J, Crothers K, Feldman C, Jones B, Kaminski N, Keane J, Lewinsohn D, Metersky M, Mizgerd J, Morris A, Ramirez J, Samarasinghe A, Staitieh B, Stek C, Sun J, Evans S. Postinfectious Pulmonary Complications: Establishing Research Priorities to Advance the Field: An Official American Thoracic Society Workshop Report. Annals Of The American Thoracic Society 2024, 21: 1219-1237. PMID: 39051991, DOI: 10.1513/annalsats.202406-651st.
- Trujillo G, Regueiro-Ren A, Liu C, Hu B, Sun Y, Ahangari F, Fiorini V, Ishikawa G, Al Jumaily K, Khoury J, McGovern J, Lee C, Peng X, Pivarnik T, Sun H, Walia A, Woo S, Yu S, Antin-Ozerkis D, Sauler M, Kaminski N, Herzog E, Ryu C. Toll-like Receptor 9 Inhibition Mitigates Fibroproliferative Responses in Translational Models of Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2024, 211: 91-102. PMID: 39189851, PMCID: PMC11755360, DOI: 10.1164/rccm.202401-0065oc.
- Bell J, Davies E, Brereton C, Vukmirovic M, Roberts J, Lunn K, Wickens L, Conforti F, Ridley R, Ceccato J, Sayer L, Johnston D, Vallejo A, Alzetani A, Jogai S, Marshall B, Fabre A, Richeldi L, Monk P, Skipp P, Kaminski N, Offer E, Wang Y, Davies D, Jones M. Spatial transcriptomic validation of a biomimetic model of fibrosis enables re-evaluation of a therapeutic antibody targeting LOXL2. Cell Reports Medicine 2024, 5: 101695. PMID: 39173635, PMCID: PMC11524965, DOI: 10.1016/j.xcrm.2024.101695.
- Unterman A, Zhao A, Neumark N, Schupp J, Ahangari F, Cosme C, Sharma P, Flint J, Stein Y, Ryu C, Ishikawa G, Sumida T, Gomez J, Herazo-Maya J, Dela Cruz C, Herzog E, Kaminski N. Single-Cell Profiling Reveals Immune Aberrations in Progressive Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2024, 210: 484-496. PMID: 38717443, PMCID: PMC11351796, DOI: 10.1164/rccm.202306-0979oc.
- Sand J, Jessen H, Leeming D, Yu S, Lee C, Hu B, Sun Y, Adams T, Pivarnik T, Liu A, Woo S, McGovern J, Fiorini V, Saber T, Higuero-Sevilla J, Gulati M, Kaminski N, Damsky W, Shaw A, Mohanty S, Goobie G, Zhang Y, Herzog E, Ryu C. Plasma collagen neoepitopes are associated with multiorgan disease in the ACCESS and GRADS sarcoidosis cohorts. Thorax 2024, 79: 1136-1144. PMID: 39117421, DOI: 10.1136/thorax-2023-221095.
- Mannes P, Adams T, Farsijani S, Barnes C, Latoche J, Day K, Nedrow J, Ahangari F, Kaminski N, Lee J, Tavakoli S. Noninvasive assessment of the lung inflammation-fibrosis axis by targeted imaging of CMKLR1. Science Advances 2024, 10: eadm9817. PMID: 38896611, PMCID: PMC11186491, DOI: 10.1126/sciadv.adm9817.
- Benn B, Lippitt W, Cortopassi I, Balasubramani G, Barbosa E, Drake W, Herzog E, Gibson K, Chen E, Koth L, Fuhrman C, Lynch D, Kaminski N, Wisniewski S, Carlson N, Maier L. Understanding the Added Value of High-Resolution CT Beyond Chest X-Ray in Determining Extent of Physiologic Impairment. CHEST Journal 2024, 166: 1093-1107. PMID: 38830401, PMCID: PMC11560486, DOI: 10.1016/j.chest.2024.04.031.
- Yuan Y, Sharma L, Tang W, Raredon M, Ahangari F, Khoury J, Wu D, Niklason L, Kaminski N. Single-cell RNA-seq analysis of cell-cell communications in human lung reveals a novel role of VEGF-D in acute lung injury. Physiology 2024, 39: 1314. DOI: 10.1152/physiol.2024.39.s1.1314.
- Marti Munoz J, Khoury J, Ahangari F, Deiuliis G, Kaminski N, Pandit A. Nebulizable Conjugates to Sustain Retention, Delivery, and Efficacy of Galectin-3 Inhibitory Drug TD139 in the Alveolar Space. 2024, a3218-a3218. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a3218.
- Sharma P, Taylor S A, Anderson S, Nekola F, Giuseppe D, Yan X, Schupp J, Balayev A, Justet A, Wuyts W, Vanaudenaerde B, Kaminski N. snRNAseq of IPF Stromal Cells Reveals Dysfunctional Gene Co-expression Profile. 2024, a4903-a4903. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a4903.
- Kim S, Nouws J, Cooley J, Ahangari F, Leng L, Elias J, Kaminski N, Lee P, Redente E, Kang M, Sun H, Herzog E, Bucala R, Prasse A, Sauler M. Alveolar Type 2 Cells With Impaired Proteostasis Signal to Monocyte-derived Macrophages Via a MIF/DDT-CD74 Signaling Network to Promotes Pulmonary Fibrosis in IPF. 2024, a3001-a3001. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a3001.
- Feng J, Liu Y, Kim J, Ahangari F, Kaminski N, Bain W, Jie Z, Dela Cruz C, Sharma L. Anti-inflammatory Roles of Type I Interferon Signaling in the Lung. 2024, a6230-a6230. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a6230.
- Karampitsakos T, Tourki B, Juan-Guardela B, Perrot C, Marlin K, Arsenault A, Binder H, Wuyts W, Rottoli P, Prasse A, Tzouvelekis A, Restrepo Jaramillo R, Qureshi M, Patel K, Bandyopadhyay D, Kaminski N, Herazo-Maya J. A Monocyte-specific Gene-signature Predicts Outcomes in Patients With Idiopathic Pulmonary Fibrosis and Is Reproducible in Peripheral Blood, Bronchoalveolar Lavage, and Lung Tissue. 2024, a2860-a2860. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a2860.
- Marti Munoz J, Owens P, Contessotto P, Balayev A, Serrano M, Dockery P, Kaminski N, Pandit A. Diagnosis of Idiopathic Pulmonary Fibrosis in Human Tissue Samples Using Raman Spectroscopy. 2024, a3265-a3265. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a3265.
- Yuan Y, Sharma L, Tang W, Raredon M, Ahangari F, Khoury J, Wu D, Niklason L, Kaminski N. VEGF-D Is Enriched in the Human Lung Microvascular Niche and Improves Vascular Integrity During Acute Lung Injury. 2024, a4694-a4694. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a4694.
- Adams T, Schupp J, Balayev A, Justet A, Sharma P, Anderson S, Nekola F, Deiuliis G, Yan X, Wuyts W, Vanaudenaerde B, Kaminski N. IPF Aberrant Basaloid Cells Have Chromatin Accessibility Features Distinct From Other Lung Epithelial Cells. 2024, a4898-a4898. DOI: 10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a4898.
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- Scott MKD, Quinn K, Li Q, Carroll R, Warsinske H, Vallania F, Chen S, Carns MA, Aren K, Sun J, Koloms K, Lee J, Baral J, Kropski J, Zhao H, Herzog E, Martinez FJ, Moore BB, Hinchcliff M, Denny J, Kaminski N, Herazo-Maya JD, Shah NH, Khatri P. Increased monocyte count as a cellular biomarker for poor outcomes in fibrotic diseases: a retrospective, multicentre cohort study. The Lancet Respiratory Medicine 2019, 7: 497-508. PMID: 30935881, PMCID: PMC6529612, DOI: 10.1016/s2213-2600(18)30508-3.
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- Prasse A, Binder H, Schupp JC, Kayser G, Bargagli E, Jaeger B, Hess M, Rittinghausen S, Vuga L, Lynn H, Violette S, Jung B, Quast K, Vanaudenaerde B, Xu Y, Hohlfeld JM, Krug N, Herazo-Maya JD, Rottoli P, Wuyts WA, Kaminski N. BAL Cell Gene Expression Is Indicative of Outcome and Airway Basal Cell Involvement in Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2019, 199: 622-630. PMID: 30141961, PMCID: PMC6396865, DOI: 10.1164/rccm.201712-2551oc.
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- Hersh CP, Adcock IM, Celedón JC, Cho MH, Christiani DC, Himes BE, Kaminski N, Mathias RA, Meyers DA, Quackenbush J, Redline S, Steiling KA, Tabor HK, Tobin MD, Wurfel MM, Yang IV, Koppelman GH. High-Throughput Sequencing in Respiratory, Critical Care, and Sleep Medicine Research. An Official American Thoracic Society Workshop Report. Annals Of The American Thoracic Society 2019, 16: 1-16. PMID: 30592451, PMCID: PMC6812157, DOI: 10.1513/annalsats.201810-716ws.
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- Britto CJ, Niu N, Khanal S, Huleihel L, Herazo-Maya J, Thompson A, Sauler M, Slade MD, Sharma L, Dela Cruz CS, Kaminski N, Cohn LE. BPIFA1 regulates lung neutrophil recruitment and interferon signaling during acute inflammation. American Journal Of Physiology - Lung Cellular And Molecular Physiology 2018, 316: l321-l333. PMID: 30461288, PMCID: PMC6397348, DOI: 10.1152/ajplung.00056.2018.
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- Shigemura M, Lecuona E, Angulo M, Homma T, Rodríguez DA, Gonzalez-Gonzalez FJ, Welch LC, Amarelle L, Kim SJ, Kaminski N, Budinger GRS, Solway J, Sznajder JI. Hypercapnia increases airway smooth muscle contractility via caspase-7–mediated miR-133a–RhoA signaling. Science Translational Medicine 2018, 10 PMID: 30185650, PMCID: PMC6889079, DOI: 10.1126/scitranslmed.aat1662.
- Sun J, Herazo-Maya J, Molyneaux PL, Maher TM, Kaminski N, Zhao H. Regularized Latent Class Model for Joint Analysis of High-Dimensional Longitudinal Biomarkers and a Time-to-Event Outcome. Biometrics 2018, 75: 69-77. PMID: 30178494, DOI: 10.1111/biom.12964.
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- Anathy V, Lahue KG, Chapman DG, Chia SB, Casey DT, Aboushousha R, van der Velden JLJ, Elko E, Hoffman SM, McMillan DH, Jones JT, Nolin JD, Abdalla S, Schneider R, Seward DJ, Roberson EC, Liptak MD, Cousins ME, Butnor KJ, Taatjes DJ, Budd RC, Irvin CG, Ho YS, Hakem R, Brown KK, Matsui R, Bachschmid MM, Gomez JL, Kaminski N, van der Vliet A, Janssen-Heininger YMW. Reducing protein oxidation reverses lung fibrosis. Nature Medicine 2018, 24: 1128-1135. PMID: 29988126, PMCID: PMC6204256, DOI: 10.1038/s41591-018-0090-y.
- McDonough JE, Martens DS, Tanabe N, Ahangari F, Verleden SE, Maes K, Verleden GM, Kaminski N, Hogg JC, Nawrot TS, Wuyts WA, Vanaudenaerde BM. A role for telomere length and chromosomal damage in idiopathic pulmonary fibrosis. Respiratory Research 2018, 19: 132. PMID: 29986708, PMCID: PMC6038197, DOI: 10.1186/s12931-018-0838-4.
- Everaerts S, Lammertyn EJ, Martens DS, De Sadeleer LJ, Maes K, van Batenburg AA, Goldschmeding R, van Moorsel CHM, Dupont LJ, Wuyts WA, Vos R, Gayan-Ramirez G, Kaminski N, Hogg JC, Janssens W, Verleden GM, Nawrot TS, Verleden SE, McDonough JE, Vanaudenaerde BM. The aging lung: tissue telomere shortening in health and disease. Respiratory Research 2018, 19: 95. PMID: 29751799, PMCID: PMC5948770, DOI: 10.1186/s12931-018-0794-z.
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- Tzouvelekis A, Herazo‐Maya J, Ryu C, Chu J, Zhang Y, Gibson KF, Adonteng‐Boateng P, Li Q, Pan H, Cherry B, Ahmad F, Ford HJ, Herzog EL, Kaminski N, Fares WH. S100A12 as a marker of worse cardiac output and mortality in pulmonary hypertension. Respirology 2018, 23: 771-779. PMID: 29611244, PMCID: PMC6047907, DOI: 10.1111/resp.13302.
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- Ding J, Hagood JS, Ambalavanan N, Kaminski N, Bar-Joseph Z. iDREM: Interactive visualization of dynamic regulatory networks. PLOS Computational Biology 2018, 14: e1006019. PMID: 29538379, PMCID: PMC5868853, DOI: 10.1371/journal.pcbi.1006019.
- Lino Cardenas CL, Kessinger CW, Cheng Y, MacDonald C, MacGillivray T, Ghoshhajra B, Huleihel L, Nuri S, Yeri AS, Jaffer FA, Kaminski N, Ellinor P, Weintraub NL, Malhotra R, Isselbacher EM, Lindsay ME. An HDAC9-MALAT1-BRG1 complex mediates smooth muscle dysfunction in thoracic aortic aneurysm. Nature Communications 2018, 9: 1009. PMID: 29520069, PMCID: PMC5843596, DOI: 10.1038/s41467-018-03394-7.
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- Wolters PJ, Blackwell TS, Eickelberg O, Loyd JE, Kaminski N, Jenkins G, Maher TM, Molina-Molina M, Noble PW, Raghu G, Richeldi L, Schwarz MI, Selman M, Wuyts WA, Schwartz DA. Time for a change: is idiopathic pulmonary fibrosis still idiopathic and only fibrotic? The Lancet Respiratory Medicine 2018, 6: 154-160. PMID: 29413083, PMCID: PMC5903445, DOI: 10.1016/s2213-2600(18)30007-9.
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- Ding J, Aronow BJ, Kaminski N, Kitzmiller J, Whitsett JA, Bar-Joseph Z. Reconstructing differentiation networks and their regulation from time series single-cell expression data. Genome Research 2018, 28: 383-395. PMID: 29317474, PMCID: PMC5848617, DOI: 10.1101/gr.225979.117.
- Bansal R, Nakagawa S, Yazdani S, van Baarlen J, Venkatesh A, Koh AP, Song WM, Goossens N, Watanabe H, Beasley MB, Powell CA, Storm G, Kaminski N, van Goor H, Friedman SL, Hoshida Y, Prakash J. Integrin alpha 11 in the regulation of the myofibroblast phenotype: implications for fibrotic diseases. Experimental & Molecular Medicine 2017, 49: e396-e396. PMID: 29147013, PMCID: PMC5704196, DOI: 10.1038/emm.2017.213.
- Local and Systemic CD4+ T Cell Exhaustion Reverses with Clinical Resolution of Pulmonary SarcoidosisHawkins C, Shaginurova G, Shelton DA, Herazo-Maya JD, Oswald-Richter KA, Rotsinger JE, Young A, Celada LJ, Kaminski N, Sevin C, Drake WP. Local and Systemic CD4+ T Cell Exhaustion Reverses with Clinical Resolution of Pulmonary Sarcoidosis. Journal Of Immunology Research 2017, 2017: 3642832. PMID: 29234685, PMCID: PMC5695030, DOI: 10.1155/2017/3642832.
- Crouser ED, Fingerlin TE, Yang IV, Maier LA, Nana-Sinkam P, Collman RG, Kaminski N. Application of “Omics” and Systems Biology to Sarcoidosis Research. Annals Of The American Thoracic Society 2017, 14: s445-s451. PMID: 29053026, PMCID: PMC5822413, DOI: 10.1513/annalsats.201707-567ot.
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- Wagner D, Alsafadi H, Mutze K, Costa R, Stein M, Schiller H, Kaminski N, Koenigshoff M. LSC - 2017 - Hippo-YAP/TAZ signaling is deranged in IPF. 2017, oa475. DOI: 10.1183/1393003.congress-2017.oa475.
- Montgomery R, Yu G, Ahangari F, Herazo-Maya J, Pestano L, Dalby C, Dickinson B, Nicholas C, Gallant-Behm C, Brower J, Kuehl P, McDonald J, Kaminski N. Feasibility, distribution, and efficacy of an inhaled oligonucleotide mimic of miR-29 for pulmonary fibrosis induced by bleomycin in rats. 2017, pa3480. DOI: 10.1183/1393003.congress-2017.pa3480.
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- Korde A, Jin L, Zhang JG, Ramaswamy A, Hu B, Kolahian S, Guardela BJ, Herazo-Maya J, Siegfried JM, Stabile L, Pisani MA, Herbst RS, Kaminski N, Elias JA, Puchalski JT, Takyar SS. Lung Endothelial MicroRNA-1 Regulates Tumor Growth and Angiogenesis. American Journal Of Respiratory And Critical Care Medicine 2017, 196: 1443-1455. PMID: 28853613, PMCID: PMC5736970, DOI: 10.1164/rccm.201610-2157oc.
- Ardini-Poleske ME, Clark RF, Ansong C, Carson JP, Corley RA, Deutsch GH, Hagood JS, Kaminski N, Mariani TJ, Potter SS, Pryhuber GS, Warburton D, Whitsett JA, Palmer SM, Ambalavanan N, . LungMAP: The Molecular Atlas of Lung Development Program. American Journal Of Physiology - Lung Cellular And Molecular Physiology 2017, 313: l733-l740. PMID: 28798251, PMCID: PMC5792185, DOI: 10.1152/ajplung.00139.2017.
- Ryu C, Sun H, Gulati M, Herazo-Maya J, Chen Y, Osafo-Addo A, Brandsdorfer C, Winkler J, Blaul C, Faunce J, Pan H, Woolard T, Tzouvelekis A, Antin-Ozerkis DE, Puchalski JT, Slade M, Gonzalez AL, Bogenhagen DF, Kirillov V, Feghali-Bostwick C, Gibson K, Lindell K, Herzog RI, Dela Cruz CS, Mehal W, Kaminski N, Herzog EL, Trujillo G. Extracellular Mitochondrial DNA Is Generated by Fibroblasts and Predicts Death in Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2017, 196: 1571-1581. PMID: 28783377, PMCID: PMC5754440, DOI: 10.1164/rccm.201612-2480oc.
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- Armstrong HF, Podolanczuk AJ, Barr RG, Oelsner EC, Kawut SM, Hoffman EA, Tracy R, Kaminski N, McClelland RL, Lederer DJ. Serum Matrix Metalloproteinase-7, Respiratory Symptoms, and Mortality in Community-Dwelling Adults. MESA (Multi-Ethnic Study of Atherosclerosis). American Journal Of Respiratory And Critical Care Medicine 2017, 196: 1311-1317. PMID: 28570100, PMCID: PMC5694831, DOI: 10.1164/rccm.201701-0254oc.
- Huleihel L, Sellares J, Cardenes N, Álvarez D, Faner R, Sakamoto K, Yu G, Kapetanaki MG, Kaminski N, Rojas M. Modified mesenchymal stem cells using miRNA transduction alter lung injury in a bleomycin model. American Journal Of Physiology - Lung Cellular And Molecular Physiology 2017, 313: l92-l103. PMID: 28385811, PMCID: PMC5538868, DOI: 10.1152/ajplung.00323.2016.
- Fares WH, Kaminski N. Finally, Progress in Pulmonary Hypertension Associated with Heart Failure with Preserved Ejection Fraction. American Journal Of Respiratory Cell And Molecular Biology 2017, 56: 421-422. PMID: 28362152, PMCID: PMC5449519, DOI: 10.1165/rcmb.2017-0035ed.
- Tan J, Tedrow JR, Nouraie M, Dutta JA, Miller DT, Li X, Yu S, Chu Y, Juan-Guardela B, Kaminski N, Ramani K, Biswas PS, Zhang Y, Kass DJ. Loss of Twist1 in the Mesenchymal Compartment Promotes Increased Fibrosis in Experimental Lung Injury by Enhanced Expression of CXCL12. The Journal Of Immunology 2017, 198: 2269-2285. PMID: 28179498, PMCID: PMC5337810, DOI: 10.4049/jimmunol.1600610.
- Radder JE, Zhang Y, Gregory AD, Yu S, Kelly NJ, Leader JK, Kaminski N, Sciurba FC, Shapiro SD. Extreme Trait Whole-Genome Sequencing Identifies PTPRO as a Novel Candidate Gene in Emphysema with Severe Airflow Obstruction. American Journal Of Respiratory And Critical Care Medicine 2017, 196: 159-171. PMID: 28199135, PMCID: PMC5519967, DOI: 10.1164/rccm.201606-1147oc.
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- Pandit K, Kaminski N. Chapter 7 MicroRNAs in Idiopathic Pulmonary Fibrosis Partners in Health and Disease. 2017, 179-202. DOI: 10.1016/b978-0-12-800553-8.00007-x.
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- Kusko RL, Brothers JF, Tedrow J, Pandit K, Huleihel L, Perdomo C, Liu G, Juan-Guardela B, Kass D, Zhang S, Lenburg M, Martinez F, Quackenbush J, Sciurba F, Limper A, Geraci M, Yang I, Schwartz DA, Beane J, Spira A, Kaminski N. Integrated Genomics Reveals Convergent Transcriptomic Networks Underlying Chronic Obstructive Pulmonary Disease and Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2016, 194: 948-960. PMID: 27104832, PMCID: PMC5067817, DOI: 10.1164/rccm.201510-2026oc.
- Tzouvelekis A, Yu G, Lino Cardenas CL, Herazo-Maya JD, Wang R, Woolard T, Zhang Y, Sakamoto K, Lee H, Yi JS, DeIuliis G, Xylourgidis N, Ahangari F, Lee PJ, Aidinis V, Herzog EL, Homer R, Bennett AM, Kaminski N. SH2 Domain–Containing Phosphatase-2 Is a Novel Antifibrotic Regulator in Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2016, 195: 500-514. PMID: 27736153, PMCID: PMC5378419, DOI: 10.1164/rccm.201602-0329oc.
- Peng X, Moore M, Mathur A, Zhou Y, Sun H, Gan Y, Herazo‐Maya J, Kaminski N, Hu X, Pan H, Ryu C, Osafo‐Addo A, Homer RJ, Feghali‐Bostwick C, Fares W, Gulati M, Hu B, Lee C, Elias JA, Herzog EL. Plexin C1 deficiency permits synaptotagmin 7–mediated macrophage migration and enhances mammalian lung fibrosis. The FASEB Journal 2016, 30: 4056-4070. PMID: 27609773, PMCID: PMC5102121, DOI: 10.1096/fj.201600373r.
- Tzouvelekis A, Yu G, Herazo-Maya J, Woolard T, Zhang Y, Lee H, Lee P, Herzog E, Bennett A, Kaminski N. SH2 domain-containing phosphatase-SHP-2 is a novel anti-fibrotic regulator in pulmonary fibrosis. 2016, oa4979. DOI: 10.1183/13993003.congress-2016.oa4979.
- Tzouvelekis A, Yu G, Herazo-Maya J, Wang R, Werneck de Castro J, DeIuliis G, Ahangari F, Woolard T, Arrojo e Drigo R, Homer R, Srivastava A, Herzog E, Lee P, Bianco A, Kaminski N. Thyroid hormone inhibits pulmonary fibrosis through enhancement of mitochondrial function in alveolar epithelial cells. 2016, pa780. DOI: 10.1183/13993003.congress-2016.pa780.
- Tan J, Tedrow J, Nouraie M, Dutta J, Chu Y, Ramani K, Biswas P, Juan-guardela B, Kaminski N, Zhang Y, Kass D. P049 Loss of Twist1 in Colα2(I)+ Cells Promotes Increased Fibrosis in Experimental Lung Injury Through C-X-C Motif Ligand 12 (CXCL12). QJM 2016, 109: s37-s38. DOI: 10.1093/qjmed/hcw124.021.
- Tan J, Tedrow J, Nouraie M, Dutta J, Chu Y, Juan-guardela B, Kaminski N, Zhang Y, Kass D, Kass D. Expression of RXFP1 is Decreased in Idiopathic Pulmonary Fibrosis: Implications for Relaxin-Based Therapies. QJM 2016, 109: s5-s6. DOI: 10.1093/qjmed/hcw122.003.
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- Tzouvelekis A, Yu G, Herazo-maya J, Xylourgidis N, Herzog E, Bennett A, Kaminski N. SH2 domain-containing phosphatase-SHP-2 is a novel regulator of fibroblast homeostasis in Pulmonary Fibrosis. QJM 2016, 109: s20-s20. DOI: 10.1093/qjmed/hcw121.002.
- Yu G, Wang R, Ibarra G, Tzouvelekis A, Woolard T, herazo-maya J, Sakamoto K, Li Q, Deluliis G, Ahnangari F, Vukmirovic M, Aurelien N, Adams T, Munivar A, Kaminski N. P063 The Distribution and Efficacy of MiR-29 Mimicry as a Therapy for Pulmonary Fibrosis Induced by Bleomycin in Mice. QJM 2016, 109: s42-s43. DOI: 10.1093/qjmed/hcw124.036.
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- Prasse A, Jäger B, Wirtz V, Carleo A, Kaminski N. Airway basal cells of patients with IPF are epigenetically reprogrammed and promote fibrosis. QJM 2016, 109: s7-s7. DOI: 10.1093/qjmed/hcw123.002.
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- Lu Q, Jin C, Sun J, Bowler R, Kechris K, Kaminski N, Zhao H. Post-GWAS Prioritization Through Data Integration Provides Novel Insights on Chronic Obstructive Pulmonary Disease. Statistics In Biosciences 2016, 9: 605-621. PMID: 27812370, PMCID: PMC5087812, DOI: 10.1007/s12561-016-9151-2.
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- Brownell R, Kaminski N, Woodruff PG, Bradford WZ, Richeldi L, Martinez FJ, Collard HR. Precision Medicine: The New Frontier in Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2016, 193: 1213-8. PMID: 26991475, PMCID: PMC5440061, DOI: 10.1164/rccm.201601-0169ci.
- Cuna A, Halloran B, Faye-Petersen O, Kelly D, Crossman D, Cui X, Pandit K, Kaminski N, Bhattacharya S, Ahmad A, Mariani T, Ambalavanan N. Alterations in Gene Expression and DNA Methylation during Murine and Human Lung Alveolar Septation. Pediatrics 2016, 137: 434a-434a. DOI: 10.1542/peds.137.supplement_3.434a.
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- Fares W, Pandit K, Kaminski N. Novel Mechanisms of Disease: Network Biology and MicroRNA Signaling in Pulmonary Hypertension. 2016, 123-133. DOI: 10.1007/978-3-319-23594-3_7.
- Olave N, Lal CV, Halloran B, Pandit K, Cuna AC, Faye-Petersen OM, Kelly DR, Nicola T, Benos PV, Kaminski N, Ambalavanan N. Regulation of alveolar septation by microRNA-489. American Journal Of Physiology - Lung Cellular And Molecular Physiology 2015, 310: l476-l487. PMID: 26719145, PMCID: PMC4773841, DOI: 10.1152/ajplung.00145.2015.
- Juan-Guardela B, Kaminski N. Genomics of Lung Aging and Idiopathic Pulmonary Fibrosis. 2015, 389-408. DOI: 10.1142/9789814635011_0015.
- Huang Y, Ma SF, Vij R, Oldham JM, Herazo-Maya J, Broderick SM, Strek ME, White SR, Hogarth DK, Sandbo NK, Lussier YA, Gibson KF, Kaminski N, Garcia JG, Noth I. A functional genomic model for predicting prognosis in idiopathic pulmonary fibrosis. BMC Pulmonary Medicine 2015, 15: 147. PMID: 26589497, PMCID: PMC4654815, DOI: 10.1186/s12890-015-0142-8.
- Kim S, Herazo-Maya JD, Kang DD, Juan-Guardela BM, Tedrow J, Martinez FJ, Sciurba FC, Tseng GC, Kaminski N. Integrative phenotyping framework (iPF): integrative clustering of multiple omics data identifies novel lung disease subphenotypes. BMC Genomics 2015, 16: 924. PMID: 26560100, PMCID: PMC4642618, DOI: 10.1186/s12864-015-2170-4.
- Bauer Y, Nayler O, Kaminski N. Reply: The Bleomycin Model: In Pursuit of Relevant Biomakers. American Journal Of Respiratory Cell And Molecular Biology 2015, 53: 748-749. PMID: 26517754, PMCID: PMC5455695, DOI: 10.1165/rcmb.2015-0196le.
- Hidvegi T, Stolz DB, Alcorn JF, Yousem SA, Wang J, Leme AS, Houghton AM, Hale P, Ewing M, Cai H, Garchar EA, Pastore N, Annunziata P, Kaminski N, Pilewski J, Shapiro SD, Pak SC, Silverman GA, Brunetti-Pierri N, Perlmutter DH. Enhancing Autophagy with Drugs or Lung-directed Gene Therapy Reverses the Pathological Effects of Respiratory Epithelial Cell Proteinopathy*. Journal Of Biological Chemistry 2015, 290: 29742-29757. PMID: 26494620, PMCID: PMC4705969, DOI: 10.1074/jbc.m115.691253.
- Phinney DG, Di Giuseppe M, Njah J, Sala E, Shiva S, St Croix CM, Stolz DB, Watkins SC, Di YP, Leikauf GD, Kolls J, Riches DW, Deiuliis G, Kaminski N, Boregowda SV, McKenna DH, Ortiz LA. Mesenchymal stem cells use extracellular vesicles to outsource mitophagy and shuttle microRNAs. Nature Communications 2015, 6: 8472. PMID: 26442449, PMCID: PMC4598952, DOI: 10.1038/ncomms9472.
- Moller DR, Koth LL, Maier LA, Morris A, Drake W, Rossman M, Leader JK, Collman RG, Hamzeh N, Sweiss NJ, Zhang Y, O’Neal S, Senior RM, Becich M, Hochheiser HS, Kaminski N, Wisniewski SR, Gibson KF, Group* F. Rationale and Design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis (GRADS) Study. Sarcoidosis Protocol. Annals Of The American Thoracic Society 2015, 12: 1561-1571. PMID: 26193069, PMCID: PMC4627423, DOI: 10.1513/annalsats.201503-172ot.
- Strange C, Senior RM, Sciurba F, O’Neal S, Morris A, Wisniewski SR, Bowler R, Hochheiser HS, Becich MJ, Zhang Y, Leader JK, Methé BA, Kaminski N, Sandhaus RA, Group* F. Rationale and Design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis Study. Alpha-1 Protocol. Annals Of The American Thoracic Society 2015, 12: 1551-1560. PMID: 26153726, PMCID: PMC4627425, DOI: 10.1513/annalsats.201503-143oc.
- Agassandian M, Tedrow JR, Sembrat J, Kass DJ, Zhang Y, Goncharova EA, Kaminski N, Mallampalli RK, Vuga LJ. VCAM-1 is a TGF-β1 inducible gene upregulated in idiopathic pulmonary fibrosis. Cellular Signalling 2015, 27: 2467-2473. PMID: 26386411, PMCID: PMC4684430, DOI: 10.1016/j.cellsig.2015.09.003.
- Kaminski N, Drake WP. Solving the Conundrum: Immunogenetics of Sarcoidosis. American Journal Of Respiratory And Critical Care Medicine 2015, 192: 652-654. PMID: 26371809, PMCID: PMC4595685, DOI: 10.1164/rccm.201506-1235ed.
- Staab-Weijnitz CA, Fernandez IE, Knüppel L, Maul J, Heinzelmann K, Juan-Guardela BM, Hennen E, Preissler G, Winter H, Neurohr C, Hatz R, Lindner M, Behr J, Kaminski N, Eickelberg O. FK506-Binding Protein 10, a Potential Novel Drug Target for Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2015, 192: 455-467. PMID: 26039104, PMCID: PMC4595665, DOI: 10.1164/rccm.201412-2233oc.
- Lindell KO, Rosenzweig MQ, Pilewski J, Hoffman LA, Gibson K, Kaminski N. Response. CHEST Journal 2015, 148: e57-e58. PMID: 26238840, PMCID: PMC4524332, DOI: 10.1378/chest.15-0772.
- Li X, Hastie AT, Hawkins GA, Moore WC, Ampleford EJ, Milosevic J, Li H, Busse WW, Erzurum SC, Kaminski N, Wenzel SE, Meyers DA, Bleecker ER. eQTL of bronchial epithelial cells and bronchial alveolar lavage deciphers GWAS‐identified asthma genes. Allergy 2015, 70: 1309-1318. PMID: 26119467, PMCID: PMC4583797, DOI: 10.1111/all.12683.
- Cuna A, Halloran B, Faye-Petersen O, Kelly D, Crossman DK, Cui X, Pandit K, Kaminski N, Bhattacharya S, Ahmad A, Mariani TJ, Ambalavanan N. Alterations in Gene Expression and DNA Methylation during Murine and Human Lung Alveolar Septation. American Journal Of Respiratory Cell And Molecular Biology 2015, 53: 60-73. PMID: 25387348, PMCID: PMC4566107, DOI: 10.1165/rcmb.2014-0160oc.
- Selman M, Pardo A, Sakamoto K, Kaminski N. Genomics of lung fibrosis. 2015, 6-20. DOI: 10.2217/fmeb2013.14.118.
- Kang MJ, Yoon CM, Kim BH, Lee CM, Zhou Y, Sauler M, Homer R, Dhamija A, Boffa D, West AP, Shadel GS, Ting JP, Tedrow JR, Kaminski N, Kim WJ, Lee CG, Oh YM, Elias JA. Suppression of NLRX1 in chronic obstructive pulmonary disease. Journal Of Clinical Investigation 2015, 125: 2458-2462. PMID: 25938787, PMCID: PMC4497738, DOI: 10.1172/jci71747.
- Lindell KO, Liang Z, Hoffman LA, Rosenzweig MQ, Saul MI, Pilewski JM, Gibson KF, Kaminski N. Palliative Care and Location of Death in Decedents With Idiopathic Pulmonary Fibrosis. CHEST Journal 2015, 147: 423-429. PMID: 25187973, PMCID: PMC4314817, DOI: 10.1378/chest.14-1127.
- Rosas IO, Kaminski N. Update in Diffuse Parenchymal Lung Disease 2013. American Journal Of Respiratory And Critical Care Medicine 2015, 191: 270-274. PMID: 25635490, PMCID: PMC4351573, DOI: 10.1164/rccm.201405-0856up.
- Bauer Y, Tedrow J, de Bernard S, Birker-Robaczewska M, Gibson KF, Guardela BJ, Hess P, Klenk A, Lindell KO, Poirey S, Renault B, Rey M, Weber E, Nayler O, Kaminski N. A Novel Genomic Signature with Translational Significance for Human Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory Cell And Molecular Biology 2015, 52: 217-231. PMID: 25029475, PMCID: PMC4370242, DOI: 10.1165/rcmb.2013-0310oc.
- Wilkes DS, Chew T, Flaherty KR, Frye S, Gibson KF, Kaminski N, Klemsz MJ, Lange W, Noth I, Rothhaar K. Oral immunotherapy with type V collagen in idiopathic pulmonary fibrosis. European Respiratory Journal 2015, 45: 1393-1402. PMID: 25614165, DOI: 10.1183/09031936.00105314.
- Tzouvelekis A, Kaminski N. Epigenetics in idiopathic pulmonary fibrosis1. Biochemistry And Cell Biology 2015, 93: 159-170. PMID: 25659821, DOI: 10.1139/bcb-2014-0126.
- Jara P, Calyeca J, Romero Y, Plácido L, Yu G, Kaminski N, Maldonado V, Cisneros J, Selman M, Pardo A. Matrix metalloproteinase (MMP)-19-deficient fibroblasts display a profibrotic phenotype. American Journal Of Physiology - Lung Cellular And Molecular Physiology 2015, 308: l511-l522. PMID: 25575513, PMCID: PMC5243210, DOI: 10.1152/ajplung.00043.2014.
- Campbell JD, Liu G, Luo L, Xiao J, Gerrein J, Juan-Guardela B, Tedrow J, Alekseyev YO, Yang IV, Correll M, Geraci M, Quackenbush J, Sciurba F, Schwartz DA, Kaminski N, Johnson WE, Monti S, Spira A, Beane J, Lenburg ME. Assessment of microRNA differential expression and detection in multiplexed small RNA sequencing data. RNA 2014, 21: 164-171. PMID: 25519487, PMCID: PMC4338344, DOI: 10.1261/rna.046060.114.
- Modena BD, Tedrow JR, Milosevic J, Bleecker ER, Meyers DA, Wu W, Bar-Joseph Z, Erzurum SC, Gaston BM, Busse WW, Jarjour NN, Kaminski N, Wenzel SE. Gene Expression in Relation to Exhaled Nitric Oxide Identifies Novel Asthma Phenotypes with Unique Biomolecular Pathways. American Journal Of Respiratory And Critical Care Medicine 2014, 190: 1363-1372. PMID: 25338189, PMCID: PMC4294630, DOI: 10.1164/rccm.201406-1099oc.
- Yang IV, Pedersen BS, Rabinovich E, Hennessy CE, Davidson EJ, Murphy E, Guardela BJ, Tedrow JR, Zhang Y, Singh MK, Correll M, Schwarz MI, Geraci M, Sciurba FC, Quackenbush J, Spira A, Kaminski N, Schwartz DA. Relationship of DNA Methylation and Gene Expression in Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2014, 190: 1263-1272. PMID: 25333685, PMCID: PMC4315819, DOI: 10.1164/rccm.201408-1452oc.
- Altman R, Dunker A, Hunter L, Ritchie M, Murray T, Klein T, HUANG G, TSAMARDINOS I, RAGHU V, KAMINSKI N, BENOS P. T-RECS: STABLE SELECTION OF DYNAMICALLY FORMED GROUPS OF FEATURES WITH APPLICATION TO PREDICTION OF CLINICAL OUTCOMES. Biocomputing 2014, 20: 431-42. PMID: 25592602, PMCID: PMC4299881, DOI: 10.1142/9789814644730_0041.
- Liao SG, Lin Y, Kang DD, Chandra D, Bon J, Kaminski N, Sciurba FC, Tseng GC. Missing value imputation in high-dimensional phenomic data: imputable or not, and how? BMC Bioinformatics 2014, 15: 346. PMID: 25371041, PMCID: PMC4228077, DOI: 10.1186/s12859-014-0346-6.
- Ganguly K, Martin TM, Concel VJ, Upadhyay S, Bein K, Brant KA, George L, Mitra A, Thimraj TA, Fabisiak JP, Vuga LJ, Fattman C, Kaminski N, Schulz H, Leikauf GD. Secreted Phosphoprotein 1 Is a Determinant of Lung Function Development in Mice. American Journal Of Respiratory Cell And Molecular Biology 2014, 51: 637-651. PMID: 24816281, PMCID: PMC4224082, DOI: 10.1165/rcmb.2013-0471oc.
- Yu G, Herazo-Maya JD, Nukui T, Romkes M, Parwani A, Juan-Guardela BM, Robertson J, Gauldie J, Siegfried JM, Kaminski N, Kass DJ. Matrix Metalloproteinase-19 Promotes Metastatic Behavior In Vitro and Is Associated with Increased Mortality in Non–Small Cell Lung Cancer. American Journal Of Respiratory And Critical Care Medicine 2014, 190: 780-790. PMID: 25250855, PMCID: PMC4299607, DOI: 10.1164/rccm.201310-1903oc.
- White ES, Brown KK, Collard HR, Conoscenti CS, Cosgrove GP, Flaherty KR, Leff JA, Martinez FJ, Roman J, Rose D, Violette S, Kaminski N. Open-Access Biorepository for Idiopathic Pulmonary Fibrosis. The Way Forward. Annals Of The American Thoracic Society 2014, 11: 1171-1175. PMID: 25167209, PMCID: PMC4299004, DOI: 10.1513/annalsats.201406-289oi.
- Montgomery RL, Yu G, Latimer PA, Stack C, Robinson K, Dalby CM, Kaminski N, van Rooij E. MicroRNA mimicry blocks pulmonary fibrosis. EMBO Molecular Medicine 2014, 6: 1347-1356. PMID: 25239947, PMCID: PMC4287936, DOI: 10.15252/emmm.201303604.
- Braun NA, Celada LJ, Herazo-Maya JD, Abraham S, Shaginurova G, Sevin CM, Grutters J, Culver DA, Dworski R, Sheller J, Massion PP, Polosukhin VV, Johnson JE, Kaminski N, Wilkes DS, Oswald-Richter KA, Drake WP. Blockade of the Programmed Death-1 Pathway Restores Sarcoidosis CD4+ T-Cell Proliferative Capacity. American Journal Of Respiratory And Critical Care Medicine 2014, 190: 560-571. PMID: 25073001, PMCID: PMC4214083, DOI: 10.1164/rccm.201401-0188oc.
- Lam AP, Herazo-Maya JD, Sennello JA, Flozak AS, Russell S, Mutlu GM, Budinger GR, DasGupta R, Varga J, Kaminski N, Gottardi CJ. Wnt Coreceptor Lrp5 Is a Driver of Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2014, 190: 185-195. PMID: 24921217, PMCID: PMC4226053, DOI: 10.1164/rccm.201401-0079oc.
- Huang LS, Mathew B, Li H, Zhao Y, Ma SF, Noth I, Reddy SP, Harijith A, Usatyuk PV, Berdyshev EV, Kaminski N, Zhou T, Zhang W, Zhang Y, Rehman J, Kotha SR, Gurney TO, Parinandi NL, Lussier YA, Garcia JG, Natarajan V. The Mitochondrial Cardiolipin Remodeling Enzyme Lysocardiolipin Acyltransferase Is a Novel Target in Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2014, 189: 1402-1415. PMID: 24779708, PMCID: PMC4098083, DOI: 10.1164/rccm.201310-1917oc.
- Vuga LJ, Tedrow JR, Pandit KV, Tan J, Kass DJ, Xue J, Chandra D, Leader JK, Gibson KF, Kaminski N, Sciurba FC, Duncan SR. C-X-C Motif Chemokine 13 (CXCL13) Is a Prognostic Biomarker of Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2014, 189: 966-974. PMID: 24628285, PMCID: PMC4098096, DOI: 10.1164/rccm.201309-1592oc.
- Bustos ML, Huleihel L, Kapetanaki MG, Lino-Cardenas CL, Mroz L, Ellis BM, McVerry BJ, Richards TJ, Kaminski N, Cerdenes N, Mora AL, Rojas M. Aging Mesenchymal Stem Cells Fail to Protect Because of Impaired Migration and Antiinflammatory Response. American Journal Of Respiratory And Critical Care Medicine 2014, 189: 787-798. PMID: 24559482, PMCID: PMC4061541, DOI: 10.1164/rccm.201306-1043oc.
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- Fitzpatrick ME, Tedrow JR, Hillenbrand ME, Lucht L, Richards T, Norris KA, Zhang Y, Sciurba FC, Kaminski N, Morris A. Pneumocystis jirovecii colonization is associated with enhanced Th1 inflammatory gene expression in lungs of humans with chronic obstructive pulmonary disease. Microbiology And Immunology 2014, 58: 202-211. PMID: 24438206, PMCID: PMC4106795, DOI: 10.1111/1348-0421.12135.
- Voraphani N, Gladwin MT, Contreras AU, Kaminski N, Tedrow JR, Milosevic J, Bleecker ER, Meyers DA, Ray A, Ray P, Erzurum SC, Busse WW, Zhao J, Trudeau JB, Wenzel SE. An airway epithelial iNOS–DUOX2–thyroid peroxidase metabolome drives Th1/Th2 nitrative stress in human severe asthma. Mucosal Immunology 2014, 7: 1175-1185. PMID: 24518246, PMCID: PMC4130801, DOI: 10.1038/mi.2014.6.
- Modena B, Tedrow J, Milosevic J, Kaminski N, Wenzel S. Bronchial Epithelial Cell Gene Expression In Relation To Exhaled Nitric Oxide Identifies New Molecular Asthma Phenotypes. Journal Of Allergy And Clinical Immunology 2014, 133: ab176. DOI: 10.1016/j.jaci.2013.12.632.
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- Rabinovich E, Yu G, Kapetanaki M, Schneider F, Kaminski N. Changes In Expression Of Argonaut Proteins In IPF. 2012, a3473-a3473. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a3473.
- Bustos M, Bueno M, Robison A, Sciurba J, Mroz L, Niedernhofer L, Mora A, Kaminski N, Rojas M. Defective DNA Repair On The Ercc1-/Mice Causes Accelerated Aging And Increased Susceptibility To Lung Injury And Fibrosis. 2012, a5283-a5283. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a5283.
- Violette S, Sheppard D, Rosas I, Arjomandi M, Rice T, Gilman M, Kaminski N, Prasse A, Maroni B. Identification Of Biomarkers To Monitor The Activity Of STX-100, A Humanized Anti-±v²6 Antibody, In A Phase 2a Trial In Idiopathic Pulmonary Fibrosis. 2012, a2659-a2659. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a2659.
- Louis V, Milosevic J, Pandit K, Ben-Yehudah A, Richards T, Choi J, Sciurba J, Zhang Y, Myerburg M, Parwani A, Gibson K, Kaminski N. Cartilage Oligomeric Matrix Protein Is Upregulated And Modulates TGF-² Signaling In Idiopathic Pulmonary Fibrosis. 2012, a5560-a5560. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a5560.
- Mise N, Yu H, Kaminski N, Eickelberg O. The LIM Protein Zyxin Modulates TGF²1-Induced Alveolar Epithelial Cell Motility Via Integrin ±5²1. 2012, a5563-a5563. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a5563.
- Lam A, Sennello J, Herazo-Maya J, Flozak A, Russell S, Kaminski N, Gottardi C. The Wnt Co-Receptors, LRP5/6, Contribute To Fibrosis In Mice And Men. 2012, a3919-a3919. DOI: 10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a3919.
- Rabinovich EI, Kapetanaki MG, Steinfeld I, Gibson KF, Pandit KV, Yu G, Yakhini Z, Kaminski N. Global Methylation Patterns in Idiopathic Pulmonary Fibrosis. PLOS ONE 2012, 7: e33770. PMID: 22506007, PMCID: PMC3323629, DOI: 10.1371/journal.pone.0033770.
- Leikauf GD, Pope-Varsalona H, Concel VJ, Liu P, Bein K, Berndt A, Martin TM, Ganguly K, Jang AS, Brant KA, Dopico RA, Upadhyay S, Di YP, Li Q, Hu Z, Vuga LJ, Medvedovic M, Kaminski N, You M, Alexander DC, McDunn JE, Prows DR, Knoell DL, Fabisiak JP. Integrative Assessment of Chlorine-Induced Acute Lung Injury in Mice. American Journal Of Respiratory Cell And Molecular Biology 2012, 47: 234-244. PMID: 22447970, PMCID: PMC3423464, DOI: 10.1165/rcmb.2012-0026oc.
- Kass DJ, Yu G, Loh KS, Savir A, Borczuk A, Kahloon R, Juan-Guardela B, Deiuliis G, Tedrow J, Choi J, Richards T, Kaminski N, Greenberg SM. Cytokine-Like Factor 1 Gene Expression Is Enriched in Idiopathic Pulmonary Fibrosis and Drives the Accumulation of CD4+ T Cells in Murine Lungs Evidence for an Antifibrotic Role in Bleomycin Injury. American Journal Of Pathology 2012, 180: 1963-1978. PMID: 22429962, PMCID: PMC3354590, DOI: 10.1016/j.ajpath.2012.01.010.
- Ahmad F, Champion HC, Kaminski N. Toward Systems Biology of Pulmonary Hypertension. Circulation 2012, 125: 1477-1479. PMID: 22371329, PMCID: PMC5115209, DOI: 10.1161/circulationaha.112.096396.
- Richards TJ, Park C, Chen Y, Gibson KF, Di Y, Pardo A, Watkins SC, Choi AM, Selman M, Pilewski J, Kaminski N, Zhang Y. Allele-specific transactivation of matrix metalloproteinase 7 by FOXA2 and correlation with plasma levels in idiopathic pulmonary fibrosis. American Journal Of Physiology - Lung Cellular And Molecular Physiology 2012, 302: l746-l754. PMID: 22268124, PMCID: PMC3331579, DOI: 10.1152/ajplung.00319.2011.
- Richards TJ, Kaminski N, Baribaud F, Flavin S, Brodmerkel C, Horowitz D, Li K, Choi J, Vuga LJ, Lindell KO, Klesen M, Zhang Y, Gibson KF. Peripheral Blood Proteins Predict Mortality in Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2012, 185: 67-76. PMID: 22016448, PMCID: PMC3262037, DOI: 10.1164/rccm.201101-0058oc.
- Miše N, Yu H, Kaminski N, Eickelberg O. The LIM protein zyxin modulates TGF-β1-induced cell migration. Pneumologie 2011, 65 DOI: 10.1055/s-0031-1296127.
- Kang DD, Sibille E, Kaminski N, Tseng GC. MetaQC: objective quality control and inclusion/exclusion criteria for genomic meta-analysis. Nucleic Acids Research 2011, 40: e15-e15. PMID: 22116060, PMCID: PMC3258120, DOI: 10.1093/nar/gkr1071.
- Kass DJ, Kaminski N. Evolving Genomic Approaches to Idiopathic Pulmonary Fibrosis: Moving Beyond Genes. Clinical And Translational Science 2011, 4: 372-379. PMID: 22029812, PMCID: PMC3229869, DOI: 10.1111/j.1752-8062.2011.00287.x.
- Yamashita CM, Dolgonos L, Zemans RL, Young SK, Robertson J, Briones N, Suzuki T, Campbell MN, Gauldie J, Radisky DC, Riches DW, Yu G, Kaminski N, McCulloch CA, Downey GP. Matrix Metalloproteinase 3 Is a Mediator of Pulmonary Fibrosis. American Journal Of Pathology 2011, 179: 1733-1745. PMID: 21871427, PMCID: PMC3181358, DOI: 10.1016/j.ajpath.2011.06.041.
- Fabisiak JP, Medvedovic M, Alexander DC, McDunn JE, Concel VJ, Bein K, Jang AS, Berndt A, Vuga LJ, Brant KA, Pope‐Varsalona H, Dopico RA, Ganguly K, Upadhyay S, Li Q, Hu Z, Kaminski N, Leikauf GD. Integrative metabolome and transcriptome profiling reveals discordant energetic stress between mouse strains with differential sensitivity to acrolein‐induced acute lung injury. Molecular Nutrition & Food Research 2011, 55: 1423-1434. PMID: 21823223, PMCID: PMC3482455, DOI: 10.1002/mnfr.201100291.
- Zhou X, Wu W, Hu H, Milosevic J, Konishi K, Kaminski N, Wenzel SE. Genomic Differences Distinguish the Myofibroblast Phenotype of Distal Lung Fibroblasts from Airway Fibroblasts. American Journal Of Respiratory Cell And Molecular Biology 2011, 45: 1256-1262. PMID: 21757679, PMCID: PMC3262668, DOI: 10.1165/rcmb.2011-0065oc.
- Noble PW, Richeldi L, Kaminski N. End of an ERA: Lessons from Negative Clinical Trials in Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2011, 184: 4-5. PMID: 21737589, DOI: 10.1164/rccm.201105-0813ed.
- Gupta D, Harvey SA, Kaminski N, Swamynathan SK. Mouse Conjunctival Forniceal Gene Expression during Postnatal Development and Its Regulation by Krüppel-like Factor 4. Investigative Ophthalmology & Visual Science 2011, 52: 4951-4962. PMID: 21398290, PMCID: PMC3176043, DOI: 10.1167/iovs.10-7068.
- Zhang Y, Handley D, Kaplan T, Yu H, Bais AS, Richards T, Pandit KV, Zeng Q, Benos PV, Friedman N, Eickelberg O, Kaminski N. High Throughput Determination of TGFβ1/SMAD3 Targets in A549 Lung Epithelial Cells. PLOS ONE 2011, 6: e20319. PMID: 21625455, PMCID: PMC3098871, DOI: 10.1371/journal.pone.0020319.
- Yang I, Hennessy C, Davidson E, Bonney M, Leach S, Brown J, Turner J, Guardela B, Tedrow J, Correll M, Geraci M, Kaminski N, Quackenbush J, Sciurba F, Spira A, Schwartz D. Genome-Wide DNA Methylation Patterns In Interstitial Lung Disease (ild) And Chronic Obstructive Lung Disease (COPD). 2011, a1049-a1049. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a1049.
- Juan-Guardela B, Tedrow J, Herazo J, Aboud C, Pandit K, Chensny L, Gur D, Leader J, Benos P, Richards T, Correll M, Quackenbush J, Geraci M, Spira A, Schwartz D, Sciurba F, Kaminski N. MRNA And MicroRNA Expression Profiles Indicate Disease Severity In Patients With Idiopathic Pulmonary Fibrosis. 2011, a6005-a6005. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a6005.
- Yang I, Leach S, Turner J, Kummer N, Brown J, Murphy E, Farias-Hesson E, Sisneros N, Wang Z, Coldren C, Correll M, Geraci M, Kaminski N, Quackenbush J, Sciurba F, Spira A, Schwartz D. Somatic Mutations In The Lungs Of Patients With Idiopathic Pulmonary Fibrosis. 2011, a5537-a5537. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a5537.
- DeIuliis G, Di Giuseppe M, Phinney D, Sala E, Kaminski N, Ortiz L. Differential Expression Of Microrna In Mesenchymal Stem Cell Derived Exosomes. 2011, a3769-a3769. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a3769.
- Coldren C, Gao B, Rice J, Leach S, Yang I, Murphy E, Kaminski N, Quackenbush J, Schwartz D, Sciurba F, Spira A, Geraci M. Genome-Wide Analysis Of Somatic Genetic Alterations In Severe Lung Disease. 2011, a5529-a5529. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a5529.
- Richards T, Kuhlengel T, Choi J, Kaminski N, Bascom R. Does Ambient Air Pollution Exposure Modify Longitudinal Disease Outcomes In A Cohort Of Patients With Idiopathic Pulmonary Fibrosis? 2011, a5433-a5433. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a5433.
- Tedrow J, Juan-Guardela B, Gur D, Leader J, Schwartz D, Spira A, Geraci M, Quackenbush J, Correll M, Richards T, Chensny L, Shapiro S, Sciurba F, Kaminski N. Emphysema Gene Expression Signatures. 2011, a2271-a2271. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a2271.
- Huleihel L, Ben-Yehudah A, Manor E, Milosevic J, Benos P, Chensny L, Kaminski N. Mir 30b As A Potential Modifier Of Fibroblasts Phenotypes In Lung Fibrosis. 2011, a3528-a3528. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a3528.
- Pociask D, Chen K, Kaminski N, Kolls J. Pulmonary Fibrosis In Response To Pharmaceutical Grade Bleomycin Is Independent Of IL-17. 2011, a5982-a5982. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a5982.
- Kass D, Loh K, Borczuk A, Tedrow J, Guardela B, Kaminski N, Greenberg S. Cytokine-Like Factor I (CLF1) Expression Is Increased In Idiopathic Pulmonary Fibrosis (IPF) And Promotes Inflammation But Decreases Fibrosis In Bleomycin Injury. 2011, a2710-a2710. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a2710.
- Mathew B, huang L, Noth I, Ma S, Kaminski N, Zhao Y, Wade M, Berdyshev E, Siegler J, Jacobson J, Weishelbaum R, Natarajan V, Garcia J. Lysocardiolipin Acyltransferase (lycat) Is A Novel Candidate Gene In Radiation-Induced Pulmonary Fibrosis. 2011, a6146-a6146. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a6146.
- Pandit K, Milosevic J, Benos P, Coronello C, Ben-Yehudah A, Hagood J, Ambalavanan N, Kaminski N. Global Microrna Profiles Of Idiopathic Pulmonary Fibrosis Lungs Indicate Reversal Of Lung Differentiation. 2011, a5528-a5528. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a5528.
- Tedrow J, Juan-Guardela B, Pandit K, Gur D, Leader J, Landreneau R, Schwartz D, Geraci M, Quackenbush J, Correll M, Richards T, Chensny L, Spira A, Sciurba F, Kaminski N. Microrna Expression Profiles In Emphysema. 2011, a4099-a4099. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a4099.
- Tedrow J, Juan-Guardela B, Gur D, Leader J, Schwartz D, Spira A, Geraci M, Quackenbush J, Correll M, Richards T, Chensny L, Shapiro S, Vuga L, Sciurba F, Kaminski N. Divergent And Convergent Gene Expression Patterns In Well Phenotyped Patients With COPD And IPF. 2011, a2274-a2274. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a2274.
- Rakova I, Kapetanaki M, Pandit K, Chensny L, Gibson K, Ghedin E, Kaminski N. High-Throughput Sequencing Of MicroRNA In Idiopathic Pulmonary Fibrosis. 2011, a5538-a5538. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a5538.
- The HLA Class II Allele DRB1*1501 Is Over-Represented In Patients With Idiopathic Pulmonary FibrosisXue J, Gochuico B, Feghali-Bostwick C, Noth I, Nathan S, Rosen G, Rosas I, Gibson K, Kaminski N, Sciurba F, Zhang Y, Duncan S. The HLA Class II Allele DRB1*1501 Is Over-Represented In Patients With Idiopathic Pulmonary Fibrosis. 2011, a4272-a4272. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a4272.
- Zhang Y, Noth I, Gibson K, Ma S, Richards T, Bon J, Lindell K, Branch R, Nicolae D, Sciurba F, Garcia A, Kaminski N. A Variant In The Promoter Of MUC5B Is Associated With Idiopathic Pulmonary Fibrosis And Not Chronic Obstructive Pulmonary Disease. 2011, a6395-a6395. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a6395.
- Brothers J, Kusko R, Luo L, Liu G, Guardela B, Tedrow J, Alekseyev Y, Yang I, Correll M, Geraci M, Quackenbush J, Sciurba F, Sebastiani P, Lenburg M, Kaminski N, Schwartz D, Spira A, Beane J. Identifying Novel Transcripts And Alternative Splicing Associated With The ILD And COPD Lung Transcriptome Using MRNA-Seq. 2011, a5540-a5540. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a5540.
- Noth I, Zhang Y, Barber M, Gibson K, Ma S, Lindell K, Kaminski N, Hysi P, Nicolae D, Garcia J. Genome Wide Association Study In Idiopathic Pulmonary Fibrosis Identifies LCLAT1 As A Novel Candidate Gene. 2011, a2266-a2266. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a2266.
- Kapetanaki M, Gupta N, Chensny L, Rojas M, Benos P, Kaminski N. Whole Transcriptome Study Of Mesenchymal Stem Cell Response To TGF-Beta 1. 2011, a6007-a6007. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a6007.
- Kusko R, Beane J, Brothers J, Liu G, Luo L, Guardela B, Tedrow J, Aleksyev Y, Yang I, Correll M, Geraci M, Quackenbush J, Sciurba F, Lenburg M, Schwartz D, Kaminski N, Spira A. Characterizing The Lung Disease Transcriptome With Next Generation Rna-Sequencing. 2011, a5539-a5539. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a5539.
- Varisco B, Hagood J, Kaminski N, Whitsett J. Pulmonary Fibroblast Thy-1 Expression Modulates Elastin Expression During Alveolarization - In Part Via Rhoa Activation Of JNK. 2011, a3492-a3492. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a3492.
- Xue J, Kahloon R, Bhargava A, Banga G, Gochuico B, Dacic S, Gibson K, Kaminski N, Sciurba F, Rosas I, Otterbein L, Zhang Y, Duncan S. Decreased Survival Of Idiopathic Pulmonary Fibrosis Patients With Heat Shock Protein 70 Autoreactivity. 2011, a4275-a4275. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a4275.
- Herazo J, Gibson K, Juan-Guardela B, Ma S, Richards T, Lussier Y, Duncan S, Tseng G, Lindell K, Garcia J, Noth I, Kaminski N. Peripheral Blood Monuclear Cells Gene Expression Patterns Predict Mortality In Patients With Idiopathic Pulmonary Fibrosis. 2011, a5306-a5306. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a5306.
- Kang D, Tedrow J, Richards T, Schwartz D, Schwarz M, Martinez F, Limper A, Quackenbush J, Geraci M, Bartholmai B, Spira A, Tseng G, Sciurba F, Kaminski N. Unsupervised Combination Of Clinical And Gene Expression Data Elucidates Intermediate Phenotypes In Ild And COPD. 2011, a4087-a4087. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a4087.
- Fitzpatrick M, Tedrow J, Hillenbrand M, Lucht L, Richards T, Zhang Y, Kaminski N, Sciurba F, Morris A. Gene Expression Of Pneumocystis Jirovecii Infection In COPD Lungs. 2011, a4144-a4144. DOI: 10.1164/ajrccm-conference.2011.183.1_meetingabstracts.a4144.
- Zhang Y, Noth I, Garcia JG, Kaminski N. A Variant in the Promoter of MUC5B and Idiopathic Pulmonary Fibrosis. New England Journal Of Medicine 2011, 364: 1576-1577. PMID: 21506748, PMCID: PMC4327944, DOI: 10.1056/nejmc1013504.
- Bais AS, Kaminski N, Benos PV. Finding subtypes of transcription factor motif pairs with distinct regulatory roles. Nucleic Acids Research 2011, 39: e76-e76. PMID: 21486752, PMCID: PMC3113591, DOI: 10.1093/nar/gkr205.
- The HLA Class II Allele DRB1*1501 Is Over-Represented in Patients with Idiopathic Pulmonary FibrosisXue J, Gochuico BR, Alawad AS, Feghali-Bostwick CA, Noth I, Nathan SD, Rosen GD, Rosas IO, Dacic S, Ocak I, Fuhrman CR, Cuenco KT, Smith MA, Jacobs SS, Zeevi A, Morel PA, Pilewski JM, Valentine VG, Gibson KF, Kaminski N, Sciurba FC, Zhang Y, Duncan SR. The HLA Class II Allele DRB1*1501 Is Over-Represented in Patients with Idiopathic Pulmonary Fibrosis. PLOS ONE 2011, 6: e14715. PMID: 21373184, PMCID: PMC3044131, DOI: 10.1371/journal.pone.0014715.
- Leikauf GD, Concel VJ, Liu P, Bein K, Berndt A, Ganguly K, Jang AS, Brant KA, Dietsch M, Pope-Varsalona H, Dopico RA, Di YP, Li Q, Vuga LJ, Medvedovic M, Kaminski N, You M, Prows DR. Haplotype Association Mapping of Acute Lung Injury in Mice Implicates Activin A Receptor, Type 1. American Journal Of Respiratory And Critical Care Medicine 2011, 183: 1499-1509. PMID: 21297076, PMCID: PMC3137140, DOI: 10.1164/rccm.201006-0912oc.
- Pandit KV, Milosevic J, Kaminski N. MicroRNAs in idiopathic pulmonary fibrosis. Translational Research 2011, 157: 191-199. PMID: 21420029, DOI: 10.1016/j.trsl.2011.01.012.
- Stabile LP, Rothstein ME, Keohavong P, Lenzner D, Land SR, Gaither-Davis AL, Kim KJ, Kaminski N, Siegfried JM. Targeting of Both the c-Met and EGFR Pathways Results in Additive Inhibition of Lung Tumorigenesis in Transgenic Mice. Cancers 2010, 2: 2153-2170. PMID: 21390244, PMCID: PMC3049550, DOI: 10.3390/cancers2042153.
- Jain S, Raghavachari N, Woodhouse K, Kaminski N, Gladwin M. Characterization of Microrna Expression Profile In Platelets In Sickle Cell Disease. Blood 2010, 116: 2030. DOI: 10.1182/blood.v116.21.2030.2030.
- Erzurum S, Rounds SI, Stevens T, Aldred M, Aliotta J, Archer SL, Asosingh K, Balaban R, Bauer N, Bhattacharya J, Bogaard H, Choudhary G, Dorn GW, Dweik R, Fagan K, Fallon M, Finkel T, Geraci M, Gladwin MT, Hassoun PM, Humbert M, Kaminski N, Kawut SM, Loscalzo J, McDonald D, McMurtry IF, Newman J, Nicolls M, Rabinovitch M, Shizuru J, Oka M, Polgar P, Rodman D, Schumacker P, Stenmark K, Tuder R, Voelkel N, Sullivan E, Weinshilboum R, Yoder MC, Zhao Y, Gail D, Moore TM. Strategic Plan for Lung Vascular Research. American Journal Of Respiratory And Critical Care Medicine 2010, 182: 1554-1562. PMID: 20833821, PMCID: PMC3029941, DOI: 10.1164/rccm.201006-0869ws.
- Mi Z, Shen K, Song N, Cheng C, Song C, Kaminski N, Tseng GC. Module-based prediction approach for robust inter-study predictions in microarray data. Bioinformatics 2010, 26: 2586-2593. PMID: 20719761, PMCID: PMC2951088, DOI: 10.1093/bioinformatics/btq472.
- Liu G, Friggeri A, Yang Y, Milosevic J, Ding Q, Thannickal V, Kaminski N, Abraham E. miR-21 mediates fibrogenic activation of pulmonary fibroblasts and lung fibrosis. Journal Of Cell Biology 2010, 190: i3-i3. DOI: 10.1083/jcb1902oia3.
- Kjetil A, EICKELBERG O, GAULDIE J, KAMINSKI N, Martin K. Have advanced research technologies made real impact on respiratory medicine? Respirology 2010, 15: 876-880. PMID: 20646243, DOI: 10.1111/j.1440-1843.2010.01811.x.
- Liu G, Friggeri A, Yang Y, Milosevic J, Ding Q, Thannickal VJ, Kaminski N, Abraham E. miR-21 mediates fibrogenic activation of pulmonary fibroblasts and lung fibrosis. Journal Of Experimental Medicine 2010, 207: 1589-1597. PMID: 20643828, PMCID: PMC2916139, DOI: 10.1084/jem.20100035.
- Leikauf GD, Pope-Varsalona H, Concel VJ, Liu P, Bein K, Brant KA, Dopico RA, Di YP, Jang AS, Dietsch M, Medvedovic M, Li Q, Vuga LJ, Kaminski N, You M, Prows DR. Functional Genomics of Chlorine-induced Acute Lung Injury in Mice. Annals Of The American Thoracic Society 2010, 7: 294-296. PMID: 20601635, PMCID: PMC3136967, DOI: 10.1513/pats.201001-005sm.
- Lindell K, Zellem E, Hoffman L, Richards T, Gibson K, Dhir R, Bisceglia M, Yousem S, Nichols L, Kaminski N. The Warm Autopsy Program For Patients With Idiopathic Pulmonary Fibrosis. 2010, a4016-a4016. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a4016.
- Lindell K, Black T, Hoffman K, Richards T, Kaminski N, Gibson K, Tino G, Simonelli P, Bascom R, Cordova F, Patel N, Criner G. The Pennsylvania Idiopathic Pulmonary Fibrosis (PA-IPF) State Registry. 2010, a2964-a2964. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a2964.
- Kuhlengel T, Bascom R, Qian Z, Kaminski N, Lindell K, Tino G, Criner G, Simonelli P, Cordova F, Patel N, Gibson K. Ambient Air Pollution Exposure of Patients In The Pennsylvania Idiopathic Pulmonary Fibrosis (PA-IPF) State Registry. 2010, a4618-a4618. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a4618.
- Richards T, Lindell K, Klesen M, Kaminski N, Zhang Y, Gibson K. Peripheral Blood Biomarkers Predict Disease Progression And Mortality In IPF. 2010, a1120-a1120. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a1120.
- Lindell K, Hoffman K, Black T, Richards T, Choi J, Saul M, Kaminski N, Gibson K. Extent And Impact Of Pulmonary Fibrosis In A Regional Health System. 2010, a2966-a2966. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a2966.
- Cornwell W, Grabianowski C, Chensny L, Gaughan J, Sciurba F, Kaminski N, Richards T, Rogers T, Criner G. Alternatively Activated Macrophage (M2) Marker Expression In Leukocytes During Acute Exacerbation Of COPD (AECOPD). 2010, a5342-a5342. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a5342.
- Singh M, Tzfati Y, Chensny L, Benos P, Kaminski N. Regulation Telomerase and Telomere Length In IPF By MicroRNAs. 2010, a2297-a2297. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a2297.
- Leikauf G, Pope-Varsalona H, Concel V, Liu P, Bein K, Brant K, Dopico R, Di Y, Jang A, Medvedovic M, Li Q, Vega L, Kaminski N, You M, Prows D. Candidate Susceptibility Genes Identified By Genomewide Analysis Of Chloride-induced Acute Lung Injury In Mice. 2010, a5370-a5370. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a5370.
- Konishi K, Richards T, Song J, Chensny L, Lindell K, Herazo J, Zhang Y, Gibson K, Kaminski N, Kim D. Gene Expression Profiles Of Pulmonary Fibrosis Reveal Developmental Functions As Determinants That Distinguish NSIP And UIP In Interstitial Pneumonias. 2010, a2492-a2492. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a2492.
- Zhang Y, Song J, Richards T, Porter M, Kaminski N, Hagerty S, Choi A, Kim D. Peripheral Blood Biomarkers Of Acute Exacerbation In Idiopathic Pulmonary Fibrosis. 2010, a1118-a1118. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a1118.
- Richards T, Choi J, Zhang Y, Kaminski N, Studer S. Combinatorial Analysis Of Secreted Plasma Proteins Is Associated With Long-term Outcome In Lung Transplant Recipients. 2010, a1006-a1006. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a1006.
- Ben-Yehudah A, Castro C, Eisinger V, Kinney T, Kaminski N, Schatten G, Carlisle D. Bronchial And Alveolar Epithelium Differentiated From Embryonic Stem Cells. 2010, a4916-a4916. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a4916.
- Yu G, Pandit K, Parwani A, Gilbert S, Ei-Hefnawy T, Richards T, Rosas I, Chensny L, Kaminski N. A Potential Role Of MMP19 In The Development And Progression Of Human Lung Cancer. 2010, a4983-a4983. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a4983.
- Wu W, Zhou X, Hu H, Konishi K, Milosevic J, Kaminski N, Wenzel S. Characterization Of Airway- And Distal Lung Fibroblasts Using Systems Biology Approaches. 2010, a6409-a6409. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a6409.
- Zhou X, Wu W, Hu H, Konishi K, Milosevic J, Kaminski N, Wenzel S. Gene Expression Profiles Differentiate Human Airway From Parenchymal Fibroblasts. 2010, a3978-a3978. DOI: 10.1164/ajrccm-conference.2010.181.1_meetingabstracts.a3978.
- Yousem SA, Gibson K, Kaminski N, Oddis CV, Ascherman DP. The pulmonary histopathologic manifestations of the anti-Jo-1 tRNA synthetase syndrome. Modern Pathology 2010, 23: 874-880. PMID: 20228783, DOI: 10.1038/modpathol.2010.65.
- Gilani SR, Vuga LJ, Lindell KO, Gibson KF, Xue J, Kaminski N, Valentine VG, Lindsay EK, George MP, Steele C, Duncan SR. CD28 Down-Regulation on Circulating CD4 T-Cells Is Associated with Poor Prognoses of Patients with Idiopathic Pulmonary Fibrosis. PLOS ONE 2010, 5: e8959. PMID: 20126467, PMCID: PMC2813297, DOI: 10.1371/journal.pone.0008959.
- Rajkumar R, Konishi K, Richards TJ, Ishizawar DC, Wiechert AC, Kaminski N, Ahmad F. Genomewide RNA expression profiling in lung identifies distinct signatures in idiopathic pulmonary arterial hypertension and secondary pulmonary hypertension. AJP Heart And Circulatory Physiology 2010, 298: h1235-h1248. PMID: 20081107, PMCID: PMC2853417, DOI: 10.1152/ajpheart.00254.2009.
- Lindell KO, Olshansky E, Song MK, Zullo TG, Gibson KF, Kaminski N, Hoffman LA. Impact of a disease-management program on symptom burden and health-related quality of life in patients with idiopathic pulmonary fibrosis and their care partners. Heart & Lung 2009, 39: 304-313. PMID: 20561836, PMCID: PMC3467095, DOI: 10.1016/j.hrtlng.2009.08.005.
- Wu W, Kaminski N. Chronic lung diseases. WIREs Mechanisms Of Disease 2009, 1: 298-308. PMID: 20835999, DOI: 10.1002/wsbm.23.
- Ben-Yehudah A, Navara CS, Redinger CJ, Mich-Basso JD, Castro CA, Oliver S, Chensny LJ, Richards TJ, Kaminski N, Schatten G. Pluripotency genes overexpressed in primate embryonic stem cells are localized on homologues of human chromosomes 16, 17, 19, and X. Stem Cell Research 2009, 4: 25-37. PMID: 19854689, PMCID: PMC2818202, DOI: 10.1016/j.scr.2009.09.003.
- Bon JM, Leader JK, Weissfeld JL, Coxson HO, Zheng B, Branch RA, Kondragunta V, Lee JS, Zhang Y, Choi AM, Lokshin AE, Kaminski N, Gur D, Sciurba FC. The Influence of Radiographic Phenotype and Smoking Status on Peripheral Blood Biomarker Patterns in Chronic Obstructive Pulmonary Disease. PLOS ONE 2009, 4: e6865. PMID: 19718453, PMCID: PMC2730536, DOI: 10.1371/journal.pone.0006865.
- Scotton CJ, Krupiczojc MA, Königshoff M, Mercer PF, Lee YC, Kaminski N, Morser J, Post JM, Maher TM, Nicholson AG, Moffatt JD, Laurent GJ, Derian CK, Eickelberg O, Chambers RC. Increased local expression of coagulation factor X contributes to the fibrotic response in human and murine lung injury. Journal Of Clinical Investigation 2009, 119: 2550-2563. PMID: 19652365, PMCID: PMC2735922, DOI: 10.1172/jci33288.
- Richards TJ, Eggebeen A, Gibson K, Yousem S, Fuhrman C, Gochuico BR, Fertig N, Oddis CV, Kaminski N, Rosas IO, Ascherman DP. Characterization and peripheral blood biomarker assessment of anti–Jo‐1 antibody–positive interstitial lung disease. Arthritis & Rheumatism 2009, 60: 2183-2192. PMID: 19565490, PMCID: PMC2710404, DOI: 10.1002/art.24631.
- Stuckenholz C, Lu L, Thakur P, Kaminski N, Bahary N. FACS-Assisted Microarray Profiling Implicates Novel Genes and Pathways in Zebrafish Gastrointestinal Tract Development. Gastroenterology 2009, 137: 1321-1332. PMID: 19563808, PMCID: PMC2785077, DOI: 10.1053/j.gastro.2009.06.050.
- Di Giuseppe M, Gambelli F, Hoyle GW, Lungarella G, Studer SM, Richards T, Yousem S, McCurry K, Dauber J, Kaminski N, Leikauf G, Ortiz LA. Systemic Inhibition of NF-κB Activation Protects from Silicosis. PLOS ONE 2009, 4: e5689. PMID: 19479048, PMCID: PMC2682759, DOI: 10.1371/journal.pone.0005689.
- Snyder JC, Reynolds SD, Hollingsworth JW, Li Z, Kaminski N, Stripp BR. Clara Cells Attenuate the Inflammatory Response through Regulation of Macrophage Behavior. American Journal Of Respiratory Cell And Molecular Biology 2009, 42: 161-171. PMID: 19423773, PMCID: PMC2822978, DOI: 10.1165/rcmb.2008-0353oc.
- Corcoran DL, Pandit KV, Gordon B, Bhattacharjee A, Kaminski N, Benos PV. Features of Mammalian microRNA Promoters Emerge from Polymerase II Chromatin Immunoprecipitation Data. PLOS ONE 2009, 4: e5279. PMID: 19390574, PMCID: PMC2668758, DOI: 10.1371/journal.pone.0005279.
- Konishi K, Gibson KF, Lindell KO, Richards TJ, Zhang Y, Dhir R, Bisceglia M, Gilbert S, Yousem SA, Song JW, Kim DS, Kaminski N. Gene Expression Profiles of Acute Exacerbations of Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2009, 180: 167-175. PMID: 19363140, PMCID: PMC2714820, DOI: 10.1164/rccm.200810-1596oc.
- Kliment C, Gochuico B, Kaminski N, Rosas I, Oury T. Contrasts between IPF and Mouse Models of Pulmonary Fibrosis. 2009, a2716. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a2716.
- Geyer A, Gochuico B, Kaminski N, Morse D, Rosas I. Decreased Expression of Cholesterol and Fatty Acid Synthesis Genes in Lungs of Patients with Pulmonary Fibrosis. 2009, a1912. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a1912.
- Tedrow J, Konishi K, Landreneau R, Luketich J, Kaminski N, Sciurba F. Association of Radiographic COPD Phenotypes with Differential Gene Expression. 2009, a2996. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a2996.
- Milosevic J, Pandit K, Jacobs R, Benos P, Yakhini Z, Chensny L, Kaminski N. The Role of miR-154 microRNA Family in IPF. 2009, a2732. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a2732.
- Konishi K, Gibson K, Richards T, Lindell K, Chensny L, Zhang Y, Kaminski N, Kim D. Expression of Alpha-Defensins in the Lungs and Peripheral Blood of Patients with Acute Exacerbations of Idiopathic Pulmonary Fibrosis. 2009, a3020. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a3020.
- Cunanan, Rogers T, Ciccolella D, Grabianowski C, Chensny L, Crookshank A, Gaughan J, Sciurba F, Kaminski N, Richards T, Mamary A, Chatila W, Criner G. Altered Immune Competence of Peripheral Blood Leukocytes during AECOPD. 2009, a2975. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a2975.
- Vuga L, Ben-Yehudah A, Pandit K, Zheng Y, Sciurba J, Milosevic J, Chensny L, Konishi K, Gibson K, Kaminski N. Cartilage Oligomeric Matrix Protein Is a Potential Biomarker for Idiopathic Pulmonary Fibrosis. 2009, a3487. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a3487.
- Yu G, Konishi K, Herazo J, Hanley D, Pacheco G, Richards T, Kaminski N, Rosas I. Positive Feedback Loop Regulates Transcription of Syndecan-2 and Multiple TGF-beta Target Genes in HL-60 Cells. 2009, a1876. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a1876.
- Konishi K, Gochuico B, Herazo J, Richards T, MacDonald S, Kaminski N, Rosas I. Molecular Characterization of Early Interstitial Lung Disease in Familial Pulmonary Fibrosis. 2009, a3494. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a3494.
- Pandit K, Corcoran D, Konishi K, Benos P, Kaminski N. Expression and Role of miR-30 in Idiopathic Pulmonary Fibrosis. 2009, a5310. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a5310.
- Ben-Yehudah A, Yousef H, LeJeune M, Huleihel L, Takac E, Chensny L, Kaminski N. The MicroRNA Let7d Causes Mesenchymal to Epithelial Transition in Human Lung Fibroblasts. 2009, a2490. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a2490.
- Herazo J, Juan B, Chensny L, Richards T, Konishi K, leJeune M, Ravinovich E, Lindell K, Gibson K, Kaminski N. Gene Expression Patterns of Peripheral Blood Mononuclear Cells in Patients with Idiopathic Pulmonary Fibrosis. 2009, a2731. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a2731.
- Rosas I, Weissfeld J, Furman C, Gibson K, Leader J, Gur D, Tedrow J, Kaminski N, Sciurba F. Early Interstitial Lung Disease in Smokers from the PLuSS Study. 2009, a1125. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a1125.
- Voeghtly L, Kaminski N, Oury T. MMP activation peptide detection in biological samples as a diagnostic marker of idiopathic pulmonary fibrosis. The FASEB Journal 2009, 23: 572.11-572.11. DOI: 10.1096/fasebj.23.1_supplement.572.11.
- Singh M, Patel J, Majister M, Kaminski N. Regulation of microRNA let-7d Expression in Idiopathic Pulmonary Fibrosis. 2009, a3016. DOI: 10.1164/ajrccm-conference.2009.179.1_meetingabstracts.a3016.
- Vuga LJ, Ben-Yehudah A, Kovkarova-Naumovski E, Oriss T, Gibson KF, Feghali-Bostwick C, Kaminski N. WNT5A Is a Regulator of Fibroblast Proliferation and Resistance to Apoptosis. American Journal Of Respiratory Cell And Molecular Biology 2009, 41: 583-589. PMID: 19251946, PMCID: PMC2778165, DOI: 10.1165/rcmb.2008-0201oc.
- Zheng L, Zhou Z, Lin L, Alber S, Watkins S, Kaminski N, Choi AM, Morse D. Carbon Monoxide Modulates α–Smooth Muscle Actin and Small Proline Rich-1a Expression in Fibrosis. American Journal Of Respiratory Cell And Molecular Biology 2008, 41: 85-92. PMID: 19097987, PMCID: PMC2701963, DOI: 10.1165/rcmb.2007-0401oc.
- Kliment CR, Englert JM, Gochuico BR, Yu G, Kaminski N, Rosas I, Oury TD. Oxidative Stress Alters Syndecan-1 Distribution in Lungs with Pulmonary Fibrosis*. Journal Of Biological Chemistry 2008, 284: 3537-3545. PMID: 19073610, PMCID: PMC2635035, DOI: 10.1074/jbc.m807001200.
- Wu W, Dave NB, Yu G, Strollo PJ, Kovkarova-Naumovski E, Ryter SW, Reeves SR, Dayyat E, Wang Y, Choi AM, Gozal D, Kaminski N. Network analysis of temporal effects of intermittent and sustained hypoxia on rat lungs. Physiological Genomics 2008, 36: 24-34. PMID: 18826996, PMCID: PMC2604785, DOI: 10.1152/physiolgenomics.00258.2007.
- Zemke AC, Snyder JC, Brockway BL, Drake JA, Reynolds SD, Kaminski N, Stripp BR. Molecular Staging of Epithelial Maturation Using Secretory Cell–Specific Genes as Markers. American Journal Of Respiratory Cell And Molecular Biology 2008, 40: 340-348. PMID: 18757308, PMCID: PMC2645532, DOI: 10.1165/rcmb.2007-0380oc.
- Lin TH, Kaminski N, Bar-Joseph Z. Alignment and classification of time series gene expression in clinical studies. Bioinformatics 2008, 24: i147-i155. PMID: 18586707, PMCID: PMC2718630, DOI: 10.1093/bioinformatics/btn152.
- Lin L, Zhou Z, Zheng L, Alber S, Watkins S, Ray P, Kaminski N, Zhang Y, Morse D. Cross Talk between Id1 and Its Interactive Protein Dril1 Mediate Fibroblast Responses to Transforming Growth Factor-β in Pulmonary Fibrosis. American Journal Of Pathology 2008, 173: 337-346. PMID: 18583319, PMCID: PMC2475772, DOI: 10.2353/ajpath.2008.070915.
- Studer SM, Taioli E, Crespo M, Kaminski N. Malignancy in Lung Transplantation: Biomarkers, Gender Differences, and Consideration of a Systems Biology Approach. Transplantation 2008, 85: s69-s71. PMID: 18425041, DOI: 10.1097/tp.0b013e31816c2feb.
- Selman M, Pardo A, Kaminski N. Idiopathic Pulmonary Fibrosis: Aberrant Recapitulation of Developmental Programs? PLOS Medicine 2008, 5: e62. PMID: 18318599, PMCID: PMC2265304, DOI: 10.1371/journal.pmed.0050062.
- Dolinay T, Wu W, Kaminski N, Ifedigbo E, Kaynar AM, Szilasi M, Watkins SC, Ryter SW, Hoetzel A, Choi AM. Mitogen-Activated Protein Kinases Regulate Susceptibility to Ventilator-Induced Lung Injury. PLOS ONE 2008, 3: e1601. PMID: 18270588, PMCID: PMC2223071, DOI: 10.1371/journal.pone.0001601.
- Englert JM, Hanford LE, Kaminski N, Tobolewski JM, Tan RJ, Fattman CL, Ramsgaard L, Richards TJ, Loutaev I, Nawroth PP, Kasper M, Bierhaus A, Oury TD. A Role for the Receptor for Advanced Glycation End Products in Idiopathic Pulmonary Fibrosis. American Journal Of Pathology 2008, 172: 583-591. PMID: 18245812, PMCID: PMC2258251, DOI: 10.2353/ajpath.2008.070569.
- Yu H, Königshoff M, Jayachandran A, Handley D, Seeger W, Kaminski N, Eickelberg O. Transgelin is a direct target of TGF‐β/Smad3‐dependent epithelial cell migration in lung fibrosis. The FASEB Journal 2008, 22: 1778-1789. PMID: 18245174, DOI: 10.1096/fj.07-083857.
- Ben-Dov I, Kaminski N, Reichert N, Rosenman J, Shulimzon T. Diaphragmatic paralysis: a clinical imitator of cardiorespiratory diseases. Israel Medical Association Journal 2008, 10: 579-83. PMID: 18847154.
- Pardo A, Selman M, Kaminski N. Approaching the degradome in idiopathic pulmonary fibrosis. The International Journal Of Biochemistry & Cell Biology 2007, 40: 1141-1155. PMID: 18207447, DOI: 10.1016/j.biocel.2007.11.020.
- Novershtern N, Itzhaki Z, Manor O, Friedman N, Kaminski N. A Functional and Regulatory Map of Asthma. American Journal Of Respiratory Cell And Molecular Biology 2007, 38: 324-336. PMID: 17921359, PMCID: PMC2258452, DOI: 10.1165/rcmb.2007-0151oc.
- RadomAizik S, Kaminski N, Hayek S, Halkin H, Cooper D, BenDov I. Effects of Exercise Training on Quadriceps Muscle Gene Expression in Chronic Obstructive Pulmonary Disease. Cardiopulmonary Physical Therapy Journal 2007, 18: 26-27. DOI: 10.1097/01823246-200718030-00009.
- Feghali-Bostwick CA, Tsai CG, Valentine VG, Kantrow S, Stoner MW, Pilewski JM, Gadgil A, George MP, Gibson KF, Choi AM, Kaminski N, Zhang Y, Duncan SR. Cellular and Humoral Autoreactivity in Idiopathic Pulmonary Fibrosis. The Journal Of Immunology 2007, 179: 2592-2599. PMID: 17675522, DOI: 10.4049/jimmunol.179.4.2592.
- Navara CS, Mich‐Basso J, Redinger CJ, Ben‐Yehudah A, Jacoby E, Kovkarova‐Naumovski E, Sukhwani M, Orwig K, Kaminski N, Castro CA, Simerly CR, Schatten G. Pedigreed Primate Embryonic Stem Cells Express Homogeneous Familial Gene Profiles. Stem Cells 2007, 25: 2695-2704. PMID: 17641389, PMCID: PMC4357318, DOI: 10.1634/stemcells.2007-0286.
- Collard HR, Moore BB, Flaherty KR, Brown KK, Kaner RJ, King TE, Lasky JA, Loyd JE, Noth I, Olman MA, Raghu G, Roman J, Ryu JH, Zisman DA, Hunninghake GW, Colby TV, Egan JJ, Hansell DM, Johkoh T, Kaminski N, Kim DS, Kondoh Y, Lynch DA, Müller-Quernheim J, Myers JL, Nicholson AG, Selman M, Toews GB, Wells AU, Martinez FJ, Investigators T. Acute Exacerbations of Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2007, 176: 636-643. PMID: 17585107, PMCID: PMC2094133, DOI: 10.1164/rccm.200703-463pp.
- Selman M, Carrillo G, Estrada A, Mejia M, Becerril C, Cisneros J, Gaxiola M, Pérez-Padilla R, Navarro C, Richards T, Dauber J, King TE, Pardo A, Kaminski N. Accelerated Variant of Idiopathic Pulmonary Fibrosis: Clinical Behavior and Gene Expression Pattern. PLOS ONE 2007, 2: e482. PMID: 17534432, PMCID: PMC1868965, DOI: 10.1371/journal.pone.0000482.
- Radom-Aizik S, Kaminski N, Hayek S, Halkin H, Cooper DM, Ben-Dov I. Effects of exercise training on quadriceps muscle gene expression in chronic obstructive pulmonary disease. Journal Of Applied Physiology 2007, 102: 1976-1984. PMID: 17483440, DOI: 10.1152/japplphysiol.00577.2006.
- Raj JU, Aliferis C, Caprioli RM, Cowley AW, Davies PF, Duncan MW, Erle DJ, Erzurum SC, Finn PW, Ischiropoulos H, Kaminski N, Kleeberger SR, Leikauf GD, Loyd JE, Martin TR, Matalon S, Moore JH, Quackenbush J, Sabo-Attwood T, Shapiro SD, Schnitzer JE, Schwartz DA, Schwiebert LM, Sheppard D, Ware LB, Weiss ST, Whitsett JA, Wurfel MM, Matthay MA. Genomics and proteomics of lung disease: conference summary. American Journal Of Physiology - Lung Cellular And Molecular Physiology 2007, 293: l45-l51. PMID: 17468134, PMCID: PMC4212816, DOI: 10.1152/ajplung.00139.2007.
- Kaminski N, Bar-Joseph Z. A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies. Journal Of Computational Biology 2007, 14: 324-338. PMID: 17563314, DOI: 10.1089/cmb.2007.0001.
- Studer S, Richards T, Wu W, McCurry K, Kaminski N. 331: Gene expression profiles in peripheral blood for the noninvasive diagnosis of chronic lung allograft rejection. The Journal Of Heart And Lung Transplantation 2007, 26: s179. DOI: 10.1016/j.healun.2006.11.351.
- Dehan E, Ben-Dor A, Liao W, Lipson D, Frimer H, Rienstein S, Simansky D, Krupsky M, Yaron P, Friedman E, Rechavi G, Perlman M, Aviram-Goldring A, Izraeli S, Bittner M, Yakhini Z, Kaminski N. Chromosomal aberrations and gene expression profiles in non-small cell lung cancer. Lung Cancer 2007, 56: 175-184. PMID: 17258348, DOI: 10.1016/j.lungcan.2006.12.010.
- Studer SM, Kaminski N. Towards Systems Biology of Human Pulmonary Fibrosis. Annals Of The American Thoracic Society 2007, 4: 85-91. PMID: 17202296, PMCID: PMC2647618, DOI: 10.1513/pats.200607-139jg.
- Rosas IO, Kaminski N. When It Comes to Genes—IPF or NSIP, Familial or Sporadic—They're All the Same. American Journal Of Respiratory And Critical Care Medicine 2007, 175: 5-6. PMID: 17179494, DOI: 10.1164/rccm.200610-1415ed.
- Wang XM, Zhang Y, Kim HP, Zhou Z, Feghali-Bostwick CA, Liu F, Ifedigbo E, Xu X, Oury TD, Kaminski N, Choi AM. Caveolin-1: a critical regulator of lung fibrosis in idiopathic pulmonary fibrosis. Journal Of Experimental Medicine 2006, 203: 2895-2906. PMID: 17178917, PMCID: PMC1850940, DOI: 10.1084/jem.20061536.
- Patel S, Choi A, Zhang Y, Kaminski N, Lokshin A, Weissfeld J, Sciurba F. Systemic Biomarker Pattern in Different Chronic Obstructive Pulmonary Disease Phenotypes Independent of Smoking Status. Annals Of The American Thoracic Society 2006, 3: 551-551. DOI: 10.1513/pats.200603-083ms.
- Ning W, Lee J, Kaminski N, Feghali-Bostwick CA, Watkins SC, Pilewski JM, Peters DG, Hogg JC, Choi AM. Comprehensive Analysis of Gene Expression on GOLD-2 Versus GOLD-0 Smokers Reveals Novel Genes Important in the Pathogenesis of COPD. Annals Of The American Thoracic Society 2006, 3: 466-466. PMID: 16921106, DOI: 10.1513/pats.200603-031ms.
- Dekel B, Metsuyanim S, Schmidt-Ott KM, Fridman E, Jacob-Hirsch J, Simon A, Pinthus J, Mor Y, Barasch J, Amariglio N, Reisner Y, Kaminski N, Rechavi G. Multiple Imprinted and Stemness Genes Provide a Link between Normal and Tumor Progenitor Cells of the Developing Human Kidney. Cancer Research 2006, 66: 6040-6049. PMID: 16778176, DOI: 10.1158/0008-5472.can-05-4528.
- Lindell KO, Erlen JA, Kaminski N. Lessons from Our Patients: Development of a Warm Autopsy Program. PLOS Medicine 2006, 3: e234. PMID: 16724871, PMCID: PMC1472556, DOI: 10.1371/journal.pmed.0030234.
- Kaminski N, Rosas IO. Gene Expression Profiling as a Window into Idiopathic Pulmonary Fibrosis Pathogenesis. Annals Of The American Thoracic Society 2006, 3: 339-344. PMID: 16738198, PMCID: PMC2658685, DOI: 10.1513/pats.200601-011tk.
- Dolinay T, Kaminski N, Felgendreher M, Kim HP, Reynolds P, Watkins SC, Karp D, Uhlig S, Choi AM. Gene expression profiling of target genes in ventilator-induced lung injury. Physiological Genomics 2006, 26: 68-75. PMID: 16569776, DOI: 10.1152/physiolgenomics.00110.2005.
- Oury T, Hanford L, Kaminski N, Fattman C, Tan R, Tobloewski J, Kasper M, Bierhaus A. RAGE: A beneficial role in pulmonary fibrosis. The FASEB Journal 2006, 20: a213-a213. DOI: 10.1096/fasebj.20.4.a213.
- Shalev A, Segman R, Friedman N, Kaminski N, Sheffi N, Goltser-Dubner T. S.16.04 Peripheral gene expression in PTSD. European Neuropsychopharmacology 2006, 16: s188. DOI: 10.1016/s0924-977x(06)70081-5.
- Kaminski N, Bar-Joseph Z. A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies. Lecture Notes In Computer Science 2006, 3909: 69-82. DOI: 10.1007/11732990_6.
- Wu W, Dave N, Tseng GC, Richards T, Xing EP, Kaminski N. Comparison of normalization methods for CodeLink Bioarray data. BMC Bioinformatics 2005, 6: 309. PMID: 16381608, PMCID: PMC1373657, DOI: 10.1186/1471-2105-6-309.
- Gagermeier J, Dauber J, Yousem S, Gibson K, Kaminski N. Abnormal Vascular Phenotypes in Patients With Idiopathic Pulmonary Fibrosis and Secondary Pulmonary Hypertension. CHEST Journal 2005, 128: 601s. PMID: 16373857, DOI: 10.1378/chest.128.6_suppl.601s.
- Stanhill A, Levin V, Hendel A, Shachar I, Kazanov D, Arber N, Kaminski N, Engelberg D. Ha-rasval12 induces HSP70b transcription via the HSE/HSF1 system, but HSP70b expression is suppressed in Ha-rasval12-transformed cells. Oncogene 2005, 25: 1485-1495. PMID: 16278678, DOI: 10.1038/sj.onc.1209193.
- RADOM-AIZIK S, HAYEK S, SHAHAR I, RECHAVI G, KAMINSKI N, BEN-DOV I. Effects of Aerobic Training on Gene Expression in Skeletal Muscle of Elderly Men. Medicine & Science In Sports & Exercise 2005, 37: 1680-1696. PMID: 16260967, DOI: 10.1249/01.mss.0000181838.96815.4d.
- Gene Expression Profiles Distinguish Idiopathic Pulmonary Fibrosis from Hypersensitivity PneumonitisSelman M, Pardo A, Barrera L, Estrada A, Watson SR, Wilson K, Aziz N, Kaminski N, Zlotnik A. Gene Expression Profiles Distinguish Idiopathic Pulmonary Fibrosis from Hypersensitivity Pneumonitis. American Journal Of Respiratory And Critical Care Medicine 2005, 173: 188-198. PMID: 16166619, PMCID: PMC2662988, DOI: 10.1164/rccm.200504-644oc.
- Pardo A, Gibson K, Cisneros J, Richards TJ, Yang Y, Becerril C, Yousem S, Herrera I, Ruiz V, Selman M, Kaminski N. Up-Regulation and Profibrotic Role of Osteopontin in Human Idiopathic Pulmonary Fibrosis. PLOS Medicine 2005, 2: e251. PMID: 16128620, PMCID: PMC1198037, DOI: 10.1371/journal.pmed.0020251.
- Segal E, Friedman N, Kaminski N, Regev A, Koller D. From signatures to models: understanding cancer using microarrays. Nature Genetics 2005, 37: s38-s45. PMID: 15920529, DOI: 10.1038/ng1561.
- Radom-Aizik S, Hayek S, Rechavi G, Amariglio N, Halkin H, Kaminski N, Ben-Dov I. Training Reverses Age-Related Gene Expression Changes In Skeletal Muscle Of Elderly Men. Medicine & Science In Sports & Exercise 2005, 37: s243. DOI: 10.1097/00005768-200505001-01259.
- Radom-Aizik S, Hayek S, Rechavi G, Amariglio N, Halkin H, Kaminski N, Ben-Dov I. Training Reverses Age-Related Gene Expression Changes In Skeletal Muscle Of Elderly Men. Medicine & Science In Sports & Exercise 2005, 37: s243. DOI: 10.1249/00005768-200505001-01259.
- Segman R, Shefi N, Goltser-Dubner T, Friedman N, Kaminski N, Shalev A. Erratum: Peripheral blood mononuclear cell gene expression profiles identify emergent post-traumatic stress disorder among trauma survivors. Molecular Psychiatry 2005, 10: 514-514. DOI: 10.1038/sj.mp.4001654.
- Segman R, Shefi N, Goltser-Dubner T, Friedman N, Kaminski N, Shalev A. Peripheral blood mononuclear cell gene expression profiles identify emergent post-traumatic stress disorder among trauma survivors. Molecular Psychiatry 2005, 10: 425-425. DOI: 10.1038/sj.mp.4001676.
- Can Blood Gene Expression Predict Which Patients with Multiple Sclerosis Will Respond to Interferon?Kaminski N, Achiron A. Can Blood Gene Expression Predict Which Patients with Multiple Sclerosis Will Respond to Interferon? PLOS Medicine 2005, 2: e33. PMID: 15736992, PMCID: PMC549584, DOI: 10.1371/journal.pmed.0020033.
- Segman RH, Shefi N, Goltser-Dubner T, Friedman N, Kaminski N, Shalev AY. Peripheral blood mononuclear cell gene expression profiles identify emergent post-traumatic stress disorder among trauma survivors. Molecular Psychiatry 2005, 10: 500-513. PMID: 15685253, DOI: 10.1038/sj.mp.4001636.
- Davé NB, Kaminski N. Analysis of Microarray Experiments for Pulmonary Fibrosis. Methods In Molecular Medicine 2005, 117: 333-358. PMID: 16118461, DOI: 10.1385/1-59259-940-0:333.
- Blundell R, Kaminski N, Harrison D. Increase in p21 expression independent of the p53 pathway in bleomycin-induced lung fibrosis. Experimental And Molecular Pathology 2004, 77: 231-237. PMID: 15507241, DOI: 10.1016/j.yexmp.2004.07.003.
- Ning W, Li CJ, Kaminski N, Feghali-Bostwick CA, Alber SM, Di YP, Otterbein SL, Song R, Hayashi S, Zhou Z, Pinsky DJ, Watkins SC, Pilewski JM, Sciurba FC, Peters DG, Hogg JC, Choi AM. Comprehensive gene expression profiles reveal pathways related to the pathogenesis of chronic obstructive pulmonary disease. Proceedings Of The National Academy Of Sciences Of The United States Of America 2004, 101: 14895-14900. PMID: 15469929, PMCID: PMC522001, DOI: 10.1073/pnas.0401168101.
- Gibson K, Kaminski N. The mechanisms of idiopathic pulmonary fibrosis: can we see the elephant? Drug Discovery Today Disease Mechanisms 2004, 1: 117-122. DOI: 10.1016/j.ddmec.2004.08.002.
- RadomAizik S, Kaminski N, Hayek S, Halkin H, Cooper D, BenDov I. Effects of Exercise Training on Quadriceps Muscle Gene Expression in Chronic Obstructive Pulmonary Disease. Cardiopulmonary Physical Therapy Journal 2004, 18: 26-27. DOI: 10.1097/01823246-200418030-00009.
- MANDEL M, GUREVICH M, PAUZNER R, KAMINSKI N, ACHIRON A. Autoimmunity gene expression portrait: specific signature that intersects or differentiates between multiple sclerosis and systemic lupus erythematosus. Clinical & Experimental Immunology 2004, 138: 164-170. PMID: 15373920, PMCID: PMC1809188, DOI: 10.1111/j.1365-2249.2004.02587.x.
- Whitsett J, Bachurski C, Barnes K, Bunn P, Case L, Cook D, Crooks D, Duncan M, Dwyer-Nield L, Elston R, Fessler M, Franklin W, Friedman N, Garcia J, Geraci M, Glasgow C, Glasser S, Hardie W, Henning L, Johnson G, Kawkitinarong K, Keith R, Korfhagen T, Leikauf G, Liggett S, Malcolm K, Malkinson A, Mariani T, McDowell S, McGraw D, Medvedovic M, Moss J, Nogee L, Nonas S, Pacheco-Rodriguez G, Palmer L, Peters D, Prows D, Redline S, Regev A, Sartor M, Schwartz D, Silverman E, Steagall W, Stearman R, Taveira-DaSilva A, Tichelaar J, Tomlinson C, Tsukada K, Weaver T, Wert S, Wesselkamper S, Worthen G, Xu Y, Zerbe L, Zhang Y, Zhang Y, Choi A, Kaminski N. Functional Genomics of Lung Disease. American Journal Of Respiratory Cell And Molecular Biology 2004, 31: s1-s81. PMID: 15269003, DOI: 10.1165/rcmb.2004-0071su.
- Dauber JH, Gibson KF, Kaminski N. Interferon-γ 1b in Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory And Critical Care Medicine 2004, 170: 107-108. PMID: 15242850, DOI: 10.1164/rccm.2405001.
- Enk CD, Shahar I, Amariglio N, Rechavi G, Kaminski N, Hochberg M. Gene expression profiling of in vivo UVB‐irradiated human epidermis. Photodermatology Photoimmunology & Photomedicine 2004, 20: 129-137. PMID: 15144390, DOI: 10.1111/j.1600-0781.2004.00097.x.
- Kaminski N, Krupsky M. Gene Expression Patterns, Prognostic and Diagnostic Markers, and Lung Cancer Biology. CHEST Journal 2004, 125: 111s-115s. PMID: 15136452, DOI: 10.1378/chest.125.5_suppl.111s-a.
- Erez A, Perelman M, Hewitt SM, Cojacaru G, Goldberg I, Shahar I, Yaron P, Muler I, Campaner S, Amariglio N, Rechavi G, Kirsch IR, Krupsky M, Kaminski N, Izraeli S. Sil overexpression in lung cancer characterizes tumors with increased mitotic activity. Oncogene 2004, 23: 5371-5377. PMID: 15107824, DOI: 10.1038/sj.onc.1207685.
- Achiron A, Gurevich M, Friedman N, Kaminski N, Mandel M. Blood transcriptional signatures of multiple sclerosis: Unique gene expression of disease activity. Annals Of Neurology 2004, 55: 410-417. PMID: 14991819, DOI: 10.1002/ana.20008.
- Barash Y, Dehan E, Krupsky M, Franklin W, Geraci M, Friedman N, Kaminski N. Comparative analysis of algorithms for signal quantitation from oligonucleotide microarrays. Bioinformatics 2004, 20: 839-846. PMID: 14751998, DOI: 10.1093/bioinformatics/btg487.
- Mariani TJ, Kaminski N. Gene Expression Studies in Lung Development and Lung Stem Cell Biology. Current Topics In Developmental Biology 2004, 64: 57-71. PMID: 15563944, DOI: 10.1016/s0070-2153(04)64004-x.
- Kaminski N, Belperio J, Bitterman P, Chen L, Chensue S, Choi A, Dacic S, Dauber J, du Bois R, Enghild J, Fattman C, Grutters J, Haegens A, Hanford L, Heintz N, Henson P, Hogaboam C, Kagan V, Keane M, Kunkel S, Land S, Loyd J, Lukacs N, MacPherson M, Manning B, Manning N, Martinelli M, Moller D, Morse D, Mossman B, Noble P, Nowak N, Oury T, Pardo A, Perez A, Petty T, Phan S, Ramos-Nino M, Ray P, Rogers R, Sato H, Scapoli L, Schaefer L, Selman M, Stern M, Strollo D, Tyurin V, Valnickova Z, Welsh K, Witzmann F, Yousem S, Strieter R. Idiopathic Pulmonary Fibrosis. American Journal Of Respiratory Cell And Molecular Biology 2003, 29: s1-s105. PMID: 12936907, DOI: 10.1165/rcmb.2003-0159su.
- Kaminski N. Microarray analysis of idiopathic pulmonary fibrosis. American Journal Of Respiratory Cell And Molecular Biology 2003, 29: s32-6. PMID: 14503551.
- Margalit O, Eisenbach L, Amariglio N, Kaminski N, Harmelin A, Pfeffer R, Shohat M, Rechavi G, Berger R. Overexpression of a set of genes, including WISP-1, common to pulmonary metastases of both mouse D122 Lewis lung carcinoma and B16-F10.9 melanoma cell lines. British Journal Of Cancer 2003, 89: 314-319. PMID: 12865923, PMCID: PMC2394268, DOI: 10.1038/sj.bjc.6600977.
- Ortiz LA, Gambelli F, McBride C, Gaupp D, Baddoo M, Kaminski N, Phinney DG. Mesenchymal stem cell engraftment in lung is enhanced in response to bleomycin exposure and ameliorates its fibrotic effects. Proceedings Of The National Academy Of Sciences Of The United States Of America 2003, 100: 8407-8411. PMID: 12815096, PMCID: PMC166242, DOI: 10.1073/pnas.1432929100.
- Morris DG, Huang X, Kaminski N, Wang Y, Shapiro SD, Dolganov G, Glick A, Sheppard D. Loss of integrin αvβ6-mediated TGF-β activation causes Mmp12-dependent emphysema. Nature 2003, 422: 169-173. PMID: 12634787, DOI: 10.1038/nature01413.
- Chambers RC, Leoni P, Kaminski N, Laurent GJ, Heller RA. Global Expression Profiling of Fibroblast Responses to Transforming Growth Factor-β1 Reveals the Induction of Inhibitor of Differentiation-1 and Provides Evidence of Smooth Muscle Cell Phenotypic Switching. American Journal Of Pathology 2003, 162: 533-546. PMID: 12547711, PMCID: PMC1851161, DOI: 10.1016/s0002-9440(10)63847-3.
- Dekel B, Burakova T, Arditti FD, Reich-Zeliger S, Milstein O, Aviel-Ronen S, Rechavi G, Friedman N, Kaminski N, Passwell JH, Reisner Y. Human and porcine early kidney precursors as a new source for transplantation. Nature Medicine 2002, 9: 53-60. PMID: 12496960, DOI: 10.1038/nm812.
- Kaminski N, Friedman N. Practical Approaches to Analyzing Results of Microarray Experiments. American Journal Of Respiratory Cell And Molecular Biology 2002, 27: 125-132. PMID: 12151303, DOI: 10.1165/ajrcmb.27.2.f247.
- Lock C, Hermans G, Pedotti R, Brendolan A, Schadt E, Garren H, Langer-Gould A, Strober S, Cannella B, Allard J, Klonowski P, Austin A, Lad N, Kaminski N, Galli SJ, Oksenberg JR, Raine CS, Heller R, Steinman L. Gene-microarray analysis of multiple sclerosis lesions yields new targets validated in autoimmune encephalomyelitis. Nature Medicine 2002, 8: 500-508. PMID: 11984595, DOI: 10.1038/nm0502-500.
- Dekel B, Amariglio N, Kaminski N, Schwartz A, Goshen E, Arditti FD, Tsarfaty I, Passwell JH, Reisner Y, Rechavi G. Engraftment and differentiation of human metanephroi into functional mature nephrons after transplantation into mice is accompanied by a profile of gene expression similar to normal human kidney development. Journal Of The American Society Of Nephrology 2002, 13: 977-990. PMID: 11912257, DOI: 10.1681/asn.v134977.
- Kaminski N. Use of Oligonucleotide Microarrays to Analyze Gene Expression Patterns in Pulmonary Fibrosis Reveals Distinct Patterns of Gene Expression in Mice and Humans. CHEST Journal 2002, 121: 31s-a-32. DOI: 10.1378/chest.121.3_suppl.31s-a.
- Cojocaru G, Friedman N, Krupsky M, Yaron P, Simansky D, Yellin A, Rechavi G, Barash Y, Ben-Dor A, Yakhini Z, Kaminski N. Transcriptional Profiling of Non-small Cell Lung Cancer Using Oligonucleotide Microarrays. CHEST Journal 2002, 121: 44s. PMID: 11893681, DOI: 10.1378/chest.121.3_suppl.44s.
- Kaminski N, Zuo F, Cojocaro G, Yakhini Z, Ben-Dor A, Morris D, Sheppard D, Pardo A, Selman M, Heller RA. Use of Oligonucleotide Microarrays to Analyze Gene Expression Patterns in Pulmonary Fibrosis Reveals Distinct Patterns of Gene Expression in Mice and Humans. CHEST Journal 2002, 121: 31s-32s. PMID: 11893671, DOI: 10.1378/chest.121.3_suppl.31s.
- Hwang J, Yen D, Shahar I, Rennick D, Donaldson D, Kaminski N, Grunig G. Lung inflammation induced by mixed T cell responses: Critical mediators. Journal Of Allergy And Clinical Immunology 2002, 109: s317. DOI: 10.1016/s0091-6749(02)82112-1.
- Friedman N, Kaminski N. Statistical Methods for Analyzing Gene Expression Data for Cancer Research. Ernst Schering Foundation Symposium Proceedings 2002, 109-131. PMID: 12060998, DOI: 10.1007/978-3-662-04747-7_6.
- Lee J, Kaminski N, Dolganov G, Grunig G, Koth L, Solomon C, Erle D, Sheppard D. Interleukin-13 Induces Dramatically Different Transcriptional Programs in Three Human Airway Cell Types. American Journal Of Respiratory Cell And Molecular Biology 2001, 25: 474-485. PMID: 11694453, DOI: 10.1165/ajrcmb.25.4.4522.
- Pittet J, Griffiths M, Geiser T, Kaminski N, Dalton S, Huang X, Brown L, Gotwals P, Koteliansky V, Matthay M, Sheppard D. TGF-β is a critical mediator of acute lung injury. Journal Of Clinical Investigation 2001, 107: 1537-1544. PMID: 11413161, PMCID: PMC200192, DOI: 10.1172/jci11963.
- Kannan K, Kaminski N, Rechavi G, Jakob-Hirsch J, Amariglio N, Givol D. DNA microarray analysis of genes involved in p53 mediated apoptosis: activation of Apaf-1. Oncogene 2001, 20: 3449-3455. PMID: 11423996, DOI: 10.1038/sj.onc.1204446.
- Kannan K, Amariglio N, Rechavi G, Jakob-Hirsch J, Kela I, Kaminski N, Getz G, Domany E, Givol D. DNA microarrays identification of primary and secondary target genes regulated by p53. Oncogene 2001, 20: 2225-2234. PMID: 11402317, DOI: 10.1038/sj.onc.1204319.
- Kannan K, Amariglio N, Rechavi G, Yaakov Y, Kaminski N, Getz G, Domany E, Givol D. Primary and secondary target genes regulated by p53 identified by DNA microarrays. Nature Genetics 2001, 27: 63-63. DOI: 10.1038/87146.
- Kaminski N, Pilzer D, Cojocaru G, Margalit O, Friedman N, Reinstein S, Simansky D, Yaron P, Ninnete A, Yellin A, Rechavi G, Friedman E, Krupsky M. A composite genomic profile of lung cancer in smokers and nonsmokers. Nature Genetics 2001, 27: 63-63. DOI: 10.1038/87144.
- Cojocaru GS, Rechavi G, Kaminski N. The use of microarrays in medicine. Israel Medical Association Journal 2001, 3: 292-6. PMID: 11344848.
- Kaminski N. Bioinformatics. American Journal Of Respiratory Cell And Molecular Biology 2000, 23: 705-711. PMID: 11104721, DOI: 10.1165/ajrcmb.23.6.4291.
- Nissan A, Shaham D, Kaminski N, Bar-Ziv J. Inferior vena cava (pseudo)thrombus: computed tomographic artifact occurring with right heart failure and tricuspid incompetence. Israel Medical Association Journal 2000, 2: 859-61. PMID: 11344759.
- KAMINSKI N, ALLARD J, HELLER R. Use of Oligonucleotide Arrays to Analyze Drug Toxicity. Annals Of The New York Academy Of Sciences 2000, 919: 1-8. PMID: 11083091, DOI: 10.1111/j.1749-6632.2000.tb06861.x.
- Kaminski N, Allard J, Pittet J, Zuo F, Griffiths M, Morris D, Huang X, Sheppard D, Heller R. Global analysis of gene expression in pulmonary fibrosis reveals distinct programs regulating lung inflammation and fibrosis. Proceedings Of The National Academy Of Sciences Of The United States Of America 2000, 97: 1778-1783. PMID: 10677534, PMCID: PMC26512, DOI: 10.1073/pnas.97.4.1778.
- Munger J, Huang X, Kawakatsu H, Griffiths M, Dalton S, Wu J, Pittet J, Kaminski N, Garat C, Matthay M, Rifkin D, Sheppard D. A Mechanism for Regulating Pulmonary Inflammation and Fibrosis: The Integrin αvβ6 Binds and Activates Latent TGF β1. Cell 1999, 96: 319-328. PMID: 10025398, DOI: 10.1016/s0092-8674(00)80545-0.
- Kreiss Y, Schwartz E, Kaminski N, Raanani P, Schiby G, Zvas Z, Sidi Y. Unique pulmonary presentation of intravascular large cell lymphoma. Respiratory Medicine 1998, 92: 1087-1089. PMID: 9893783, DOI: 10.1016/s0954-6111(98)90362-6.
- Amitai M, Kaminski N, Simanski D, Sachs N, Amital H. [Bronchogenic cyst]. Harefuah 1997, 132: 308-9. PMID: 9153907.
- Schwaber M, Lossos I, Goldberg Y, Jaffe R, Kaminski N. Right-Sided Endocarditis Due to Staphylococcus aureus. Infectious Diseases In Clinical Practice 1995, 4: 453-455. DOI: 10.1097/00019048-199511000-00023.
- Kaminski N, Lossos IS, Breuer R. [Nitric oxide in the respiratory system]. Harefuah 1995, 128: 173-5. PMID: 7759010.
- Kaminski N, Lossos IS, Ben-Sira L, Laxer U, Jaffe R. Flank pain as a presentation of pulmonary embolism. Respiratory Medicine 1995, 89: 65-66. PMID: 7708985, DOI: 10.1016/0954-6111(95)90075-6.
- Heyman SN, Kaminski N, Brezis M. Dopamine increases renal medullary blood flow without improving regional hypoxia. Experimental Nephrology 1995, 3: 331-7. PMID: 8528677.
- Kaminski N, Bogomolski V, Stalnikowicz R. Acute bacterial diarrhoea in the emergency room: therapeutic implications of stool culture results. Emergency Medicine Journal 1994, 11: 168. PMID: 7804582, PMCID: PMC1342424, DOI: 10.1136/emj.11.3.168.
- Fuchs S, Kaminski N, Brezis M. Drug Points: Metabolic abnormality induced by streptomycin. The BMJ 1994, 309: 512. PMID: 8086909, PMCID: PMC2542719, DOI: 10.1136/bmj.309.6953.512.
- Carmeli Y, Mevorach D, Kaminski N, Raz E. Regression of Kaposi's sarcoma after intravenous immunoglobulin treatment for polymyositis. Cancer 1994, 73: 2859-2861. PMID: 8194027, DOI: 10.1002/1097-0142(19940601)73:11<2859::aid-cncr2820731132>3.0.co;2-p.
- Kaminski N, Shaham D, Eliakim R. Primary tumours of the duodenum. Postgraduate Medical Journal 1993, 69: 136-138. PMID: 8506195, PMCID: PMC2399609, DOI: 10.1136/pgmj.69.808.136.
- Raz E, Kaminski N, Brezis M. Effects of Perfusion Pressure and Renal Flow upon Albumin Excretion in Isolated Perfused Kidneys. Nephron 1990, 56: 396-398. PMID: 2079998, DOI: 10.1159/000186182.