Ellen F Foxman, MD, PhD
Pathology
Titles
- Associate Professor of Laboratory Medicine and Immunobiology
Education & Training
- Resident in Clinical PathologyBrigham and Women's Hospital, Harvard Medical School (2004)
- MDStanford University School of Medicine, Medicine (2001)
- PhDStanford University School of Medicine, Immunology (1999)
- BSYale University, Biology (1993)
Additional Information
Honors & Recognitions
- Yale Public Voices Fellow: The OpEd Project (2021)
- 2021 Rita Allen Foundation Scholars Award: Rita Allen Foundation (2021)
- 2021 ASCI Council Young Physician-Scientist Award: The American Society of Clinical Investigation (2021)
- 2019 Levine Lab Laureate Award: Rosalind Franklin Society (2019)
- 2018 Hartwell Individual Biomedical Research Award: The Hartwell Foundation (2019)
- 2017 Prize Recipient, National Antimicrobial Resistance Diagnostic Challenge, Phase I: NIH (2017)
- 2011 Invited lecturer, 9th International Student Seminar: Kyoto University, Kyoto, Japan
- 2010 Recipient of Research Supplement to Promote Reentry into Biomedical and Behavioral Research Careers: National Institutes of Health
- 2013 Invited Young Investigator oral presentation, ASM General Meeting: American Society for Microbiology
- 2013 Paul E. Strandjord Young Investigator Award with Distinction: Academy of Clinical Laboratory Physicians and Scientists
Board Certifications
- AB of Pathology, Clinical Pathology (2004)
Professional Service
- Yale Post-Doctoral Association Mentoring Group (2021 - 2022): Mentor
- IBIO Diversity and Inclusion Working Group (2021 - 2022): Member
- Laboratory Medicine Faculty Retreat Planning Committee (2021): Co-Chair
- YCEEH Summer Program for Undergraduate Students Underrepresented in Science (2021): Lecturer
- Swiss National Science Foundation (2021 - Present): External Reviewer
- Human Translational Immunology Steering Committee (2020 - 2022): Member
- IBIO First Year Student Mentoring Committee (2020 - 2022): Mentor
- Human Translational Immunology Seminar Series (2020 - 2022): Co-Chair
- IMPACT Biorepository Board of Governors (2020 - 2021): Board Member
- COVID-19 Lab Working Group (2020): Convener of COVID-19 Yale Lab Working group, met three times per week for two months (March-April 2020)
Publications
- Cheemarla N, Watkins T, Mihaylova V, Foxman E. Viral Interference During Influenza A–SARS-CoV-2 Coinfection of the Human Airway Epithelium and Reversal by Oseltamivir. The Journal Of Infectious Diseases 2023, jiad402. PMID: 37722683, DOI: 10.1093/infdis/jiad402.
- Xu D, Jiang W, Wu L, Gaudet R, Park E, Su M, Cheppali S, Cheemarla N, Kumar P, Uchil P, Grover J, Foxman E, Brown C, Stansfeld P, Bewersdorf J, Mothes W, Karatekin E, Wilen C, MacMicking J. PLSCR1 is a cell-autonomous defence factor against SARS-CoV-2 infection. Nature 2023, 619: 819-827. PMID: 37438530, PMCID: PMC10371867, DOI: 10.1038/s41586-023-06322-y.
- Cable J, Sun J, Cheon I, Vaughan A, Castro I, Stein S, López C, Gostic K, Openshaw P, Ellebedy A, Wack A, Hutchinson E, Thomas M, Langlois R, Lingwood D, Baker S, Folkins M, Foxman E, Ward A, Schwemmle M, Russell A, Chiu C, Ganti K, Subbarao K, Sheahan T, Penaloza‐MacMaster P, Eddens T. Respiratory viruses: New frontiers—a Keystone Symposia report. Annals Of The New York Academy Of Sciences 2023, 1522: 60-73. PMID: 36722473, DOI: 10.1111/nyas.14958.
- Cheemarla N, Hanron A, Fauver J, Bishai J, Watkins T, Brito A, Zhao D, Alpert T, Vogels C, Ko A, Schulz W, Landry M, Grubaugh N, van Dijk D, Foxman E. Nasal host response-based screening for undiagnosed respiratory viruses: a pathogen surveillance and detection study. The Lancet Microbe 2023, 4: e38-e46. PMID: 36586415, PMCID: PMC9835789, DOI: 10.1016/s2666-5247(22)00296-8.
- Escamilla-Rivera V, Santhanakrishnan M, Liu J, Gibb DR, Forsmo JE, Foxman EF, Eisenbarth SC, Luckey CJ, Zimring JC, Hudson KE, Stowell SR, Hendrickson JE. Complement Plays a Critical Role in Inflammation-Induced Immunoprophylaxis Failure in Mice. Frontiers In Immunology 2021, 12: 704072. PMID: 34249009, PMCID: PMC8270673, DOI: 10.3389/fimmu.2021.704072.
- Cheemarla NR, Watkins TA, Mihaylova VT, Wang B, Zhao D, Wang G, Landry ML, Foxman EF. Dynamic innate immune response determines susceptibility to SARS-CoV-2 infection and early replication kinetics. Journal Of Experimental Medicine 2021, 218: e20210583. PMID: 34128960, PMCID: PMC8210587, DOI: 10.1084/jem.20210583.
- Ravindra NG, Alfajaro MM, Gasque V, Huston NC, Wan H, Szigeti-Buck K, Yasumoto Y, Greaney AM, Habet V, Chow RD, Chen JS, Wei J, Filler RB, Wang B, Wang G, Niklason LE, Montgomery RR, Eisenbarth SC, Chen S, Williams A, Iwasaki A, Horvath TL, Foxman EF, Pierce RW, Pyle AM, van Dijk D, Wilen CB. Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes. PLOS Biology 2021, 19: e3001143. PMID: 33730024, PMCID: PMC8007021, DOI: 10.1371/journal.pbio.3001143.
- Cheemarla NR, Watkins TA, Mihaylova VT, Wang B, Zhao D, Wang G, Landry ML, Foxman EF. Magnitude and timing of the antiviral response determine SARS-CoV-2 replication early in infection. MedRxiv : The Preprint Server For Health Sciences 2021 PMID: 33532783, PMCID: PMC7852233, DOI: 10.1101/2021.01.22.21249812.
- Wu A, Mihaylova VT, Landry ML, Foxman EF. Viral interference cannot be concluded from datasets containing only symptomatic patients – Authors' reply. The Lancet Microbe 2021, 2: e10. PMID: 35544223, DOI: 10.1016/s2666-5247(20)30218-4.
- D’Mello A, Riegler AN, Martínez E, Beno SM, Ricketts TD, Foxman EF, Orihuela CJ, Tettelin H. An in vivo atlas of host–pathogen transcriptomes during Streptococcus pneumoniae colonization and disease. Proceedings Of The National Academy Of Sciences Of The United States Of America 2020, 117: 33507-33518. PMID: 33318198, PMCID: PMC7777036, DOI: 10.1073/pnas.2010428117.
- Wu A, Mihaylova VT, Landry ML, Foxman EF. Interference between rhinovirus and influenza A virus: a clinical data analysis and experimental infection study. The Lancet Microbe 2020, 1: e254-e262. PMID: 33103132, PMCID: PMC7580833, DOI: 10.1016/s2666-5247(20)30114-2.
- Ravindra NG, Alfajaro MM, Gasque V, Habet V, Wei J, Filler RB, Huston NC, Wan H, Szigeti-Buck K, Wang B, Wang G, Montgomery RR, Eisenbarth SC, Williams A, Pyle AM, Iwasaki A, Horvath TL, Foxman EF, Pierce RW, van Dijk D, Wilen CB. Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium. BioRxiv : The Preprint Server For Biology 2020 PMID: 32511382, PMCID: PMC7263511, DOI: 10.1101/2020.05.06.081695.
- Vogels CBF, Brito AF, Wyllie AL, Fauver JR, Ott IM, Kalinich CC, Petrone ME, Casanovas-Massana A, Catherine Muenker M, Moore AJ, Klein J, Lu P, Lu-Culligan A, Jiang X, Kim DJ, Kudo E, Mao T, Moriyama M, Oh JE, Park A, Silva J, Song E, Takahashi T, Taura M, Tokuyama M, Venkataraman A, Weizman OE, Wong P, Yang Y, Cheemarla NR, White EB, Lapidus S, Earnest R, Geng B, Vijayakumar P, Odio C, Fournier J, Bermejo S, Farhadian S, Dela Cruz CS, Iwasaki A, Ko AI, Landry ML, Foxman EF, Grubaugh ND. Analytical sensitivity and efficiency comparisons of SARS-CoV-2 RT–qPCR primer–probe sets. Nature Microbiology 2020, 5: 1299-1305. PMID: 32651556, PMCID: PMC9241364, DOI: 10.1038/s41564-020-0761-6.
- Wasik B, Wasik B, Foxman E, Iwasaki A, Turner P. Experimental Evolution of Human Rhinovirus Strains Adapting to Mouse Cells. 2020, 145-157. DOI: 10.1007/978-3-030-39831-6_12.
- Host response-based screening to identify undiagnosed cases of COVID-19 and expand testing capacity.Cheemarla NR, Brito AF, Fauver JR, Alpert T, Vogels CBF, Omer SB, Ko A, Grubaugh ND, Landry ML, Foxman EF. Host response-based screening to identify undiagnosed cases of COVID-19 and expand testing capacity. MedRxiv : The Preprint Server For Health Sciences 2020 PMID: 32577694, PMCID: PMC7302303, DOI: 10.1101/2020.06.04.20109306.
- Escamilla-Rivera V, Liu J, Gibb DR, Santhanakrishnan M, Liu D, Forsmo JE, Eisenbarth S, Foxman EF, Stowell SR, Luckey CJ, Zimring JC, Hudson KE, Hendrickson J. Poly(I:C) causes failure of immunoprophylaxis to red blood cells expressing the KEL glycoprotein in mice. Blood 2020, 135: 1983-1993. PMID: 32266378, PMCID: PMC7256361, DOI: 10.1182/blood.2020005018.
- Fauver JR, Petrone ME, Hodcroft EB, Shioda K, Ehrlich HY, Watts AG, Vogels CBF, Brito AF, Alpert T, Muyombwe A, Razeq J, Downing R, Cheemarla NR, Wyllie AL, Kalinich CC, Ott IM, Quick J, Loman NJ, Neugebauer KM, Greninger AL, Jerome KR, Roychoudhury P, Xie H, Shrestha L, Huang ML, Pitzer VE, Iwasaki A, Omer SB, Khan K, Bogoch II, Martinello RA, Foxman EF, Landry ML, Neher RA, Ko AI, Grubaugh ND. Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States. Cell 2020, 181: 990-996.e5. PMID: 32386545, PMCID: PMC7204677, DOI: 10.1016/j.cell.2020.04.021.
- Fauver JR, Petrone ME, Hodcroft EB, Shioda K, Ehrlich HY, Watts AG, Vogels CBF, Brito AF, Alpert T, Muyombwe A, Razeq J, Downing R, Cheemarla NR, Wyllie AL, Kalinich CC, Ott I, Quick J, Loman NJ, Neugebauer KM, Greninger AL, Jerome KR, Roychoundhury P, Xie H, Shrestha L, Huang ML, Pitzer VE, Iwasaki A, Omer SB, Khan K, Bogoch I, Martinello RA, Foxman EF, Landry ML, Neher RA, Ko AI, Grubaugh ND. Coast-to-coast spread of SARS-CoV-2 in the United States revealed by genomic epidemiology. MedRxiv : The Preprint Server For Health Sciences 2020 PMID: 32511630, PMCID: PMC7276058, DOI: 10.1101/2020.03.25.20043828.
- Mihaylova VT, Kong Y, Fedorova O, Sharma L, Dela Cruz CS, Pyle AM, Iwasaki A, Foxman EF. Regional Differences in Airway Epithelial Cells Reveal Tradeoff between Defense against Oxidative Stress and Defense against Rhinovirus. Cell Reports 2018, 24: 3000-3007.e3. PMID: 30208323, PMCID: PMC6190718, DOI: 10.1016/j.celrep.2018.08.033.
- Landry ML, Foxman EF. Antiviral Response in the Nasopharynx Identifies Patients With Respiratory Virus Infection. The Journal Of Infectious Diseases 2017, 217: 897-905. PMID: 29281100, PMCID: PMC5853594, DOI: 10.1093/infdis/jix648.
- Iwasaki A, Foxman EF, Molony RD. Early local immune defences in the respiratory tract. Nature Reviews Immunology 2016, 17: 7-20. PMID: 27890913, PMCID: PMC5480291, DOI: 10.1038/nri.2016.117.
- Foxman EF, Storer JA, Vanaja K, Levchenko A, Iwasaki A. Two interferon-independent double-stranded RNA-induced host defense strategies suppress the common cold virus at warm temperature. Proceedings Of The National Academy Of Sciences Of The United States Of America 2016, 113: 8496-8501. PMID: 27402752, PMCID: PMC4968739, DOI: 10.1073/pnas.1601942113.
- Foxman EF, Storer JA, Fitzgerald ME, Wasik BR, Hou L, Zhao H, Turner PE, Pyle AM, Iwasaki A. Temperature-dependent innate defense against the common cold virus limits viral replication at warm temperature in mouse airway cells. Proceedings Of The National Academy Of Sciences Of The United States Of America 2015, 112: 827-832. PMID: 25561542, PMCID: PMC4311828, DOI: 10.1073/pnas.1411030112.
- Foxman EF, Iwasaki A. Genome–virome interactions: examining the role of common viral infections in complex disease. Nature Reviews Microbiology 2011, 9: 254-264. PMID: 21407242, PMCID: PMC3678363, DOI: 10.1038/nrmicro2541.
- Foxman EF, Jarolim P. Use of the Fetal Fibronectin Test in Decisions to Admit to Hospital for Preterm Labor. Clinical Chemistry 2004, 50: 663-665. PMID: 14981040, DOI: 10.1373/clinchem.2003.028720.
- Cover Illustration: Histoplasma capsulatumFoxman EF. Cover Illustration: Histoplasma capsulatum, July 2004-June 2005. Journal of clinical microbiology. 2004; 42.
- Foxman EF, Zhang M, Hurst SD, Muchamuel T, Shen D, Wawrousek EF, Chan CC, Gery I. Inflammatory Mediators in Uveitis: Differential Induction of Cytokines and Chemokines in Th1- Versus Th2-Mediated Ocular Inflammation. The Journal Of Immunology 2002, 168: 2483-2492. PMID: 11859142, DOI: 10.4049/jimmunol.168.5.2483.
- Foxman E, Kunkel E, Butcher E. Integrating Conflicting Chemotactic Signals. Journal Of Cell Biology 1999, 147: 577-588. PMID: 10545501, PMCID: PMC2151176, DOI: 10.1083/jcb.147.3.577.
- Zigmond S, Foxman E, Segall J. Chemotaxis Assays for Eukaryotic Cells. Current Protocols In Cell Biology 1998, 00: 12.1.1-12.1.29. PMID: 18228315, DOI: 10.1002/0471143030.cb1201s00.
- Foxman E, Campbell J, Butcher E. Multistep Navigation and the Combinatorial Control of Leukocyte Chemotaxis. Journal Of Cell Biology 1997, 139: 1349-1360. PMID: 9382879, PMCID: PMC2140208, DOI: 10.1083/jcb.139.5.1349.
- Campbell J, Foxman E, Butcher E. Chemoattractant receptor cross talk as a regulatory mechanism in leukocyte adhesion and migration. European Journal Of Immunology 1997, 27: 2571-2578. PMID: 9368612, DOI: 10.1002/eji.1830271016.
- Flescher EG, Madden K, Snyder M. Components required for cytokinesis are important for bud site selection in yeast. The Journal Of Cell Biology 1993, 122: 373-86. PMID: 8320260, PMCID: PMC2119637, DOI: 10.1083/jcb.122.2.373.
Departments and Programs
Titles
- Associate Professor of Laboratory Medicine and Immunobiology
Education & Training
- Resident in Clinical PathologyBrigham and Women's Hospital, Harvard Medical School (2004)
- MDStanford University School of Medicine, Medicine (2001)
- PhDStanford University School of Medicine, Immunology (1999)
- BSYale University, Biology (1993)
Additional Information
Honors & Recognitions
- Yale Public Voices Fellow: The OpEd Project (2021)
- 2021 Rita Allen Foundation Scholars Award: Rita Allen Foundation (2021)
- 2021 ASCI Council Young Physician-Scientist Award: The American Society of Clinical Investigation (2021)
- 2019 Levine Lab Laureate Award: Rosalind Franklin Society (2019)
- 2018 Hartwell Individual Biomedical Research Award: The Hartwell Foundation (2019)
- 2017 Prize Recipient, National Antimicrobial Resistance Diagnostic Challenge, Phase I: NIH (2017)
- 2011 Invited lecturer, 9th International Student Seminar: Kyoto University, Kyoto, Japan
- 2010 Recipient of Research Supplement to Promote Reentry into Biomedical and Behavioral Research Careers: National Institutes of Health
- 2013 Invited Young Investigator oral presentation, ASM General Meeting: American Society for Microbiology
- 2013 Paul E. Strandjord Young Investigator Award with Distinction: Academy of Clinical Laboratory Physicians and Scientists
Board Certifications
- AB of Pathology, Clinical Pathology (2004)
Professional Service
- Yale Post-Doctoral Association Mentoring Group (2021 - 2022): Mentor
- IBIO Diversity and Inclusion Working Group (2021 - 2022): Member
- Laboratory Medicine Faculty Retreat Planning Committee (2021): Co-Chair
- YCEEH Summer Program for Undergraduate Students Underrepresented in Science (2021): Lecturer
- Swiss National Science Foundation (2021 - Present): External Reviewer
- Human Translational Immunology Steering Committee (2020 - 2022): Member
- IBIO First Year Student Mentoring Committee (2020 - 2022): Mentor
- Human Translational Immunology Seminar Series (2020 - 2022): Co-Chair
- IMPACT Biorepository Board of Governors (2020 - 2021): Board Member
- COVID-19 Lab Working Group (2020): Convener of COVID-19 Yale Lab Working group, met three times per week for two months (March-April 2020)
Publications
- Cheemarla N, Watkins T, Mihaylova V, Foxman E. Viral Interference During Influenza A–SARS-CoV-2 Coinfection of the Human Airway Epithelium and Reversal by Oseltamivir. The Journal Of Infectious Diseases 2023, jiad402. PMID: 37722683, DOI: 10.1093/infdis/jiad402.
- Xu D, Jiang W, Wu L, Gaudet R, Park E, Su M, Cheppali S, Cheemarla N, Kumar P, Uchil P, Grover J, Foxman E, Brown C, Stansfeld P, Bewersdorf J, Mothes W, Karatekin E, Wilen C, MacMicking J. PLSCR1 is a cell-autonomous defence factor against SARS-CoV-2 infection. Nature 2023, 619: 819-827. PMID: 37438530, PMCID: PMC10371867, DOI: 10.1038/s41586-023-06322-y.
- Cable J, Sun J, Cheon I, Vaughan A, Castro I, Stein S, López C, Gostic K, Openshaw P, Ellebedy A, Wack A, Hutchinson E, Thomas M, Langlois R, Lingwood D, Baker S, Folkins M, Foxman E, Ward A, Schwemmle M, Russell A, Chiu C, Ganti K, Subbarao K, Sheahan T, Penaloza‐MacMaster P, Eddens T. Respiratory viruses: New frontiers—a Keystone Symposia report. Annals Of The New York Academy Of Sciences 2023, 1522: 60-73. PMID: 36722473, DOI: 10.1111/nyas.14958.
- Cheemarla N, Hanron A, Fauver J, Bishai J, Watkins T, Brito A, Zhao D, Alpert T, Vogels C, Ko A, Schulz W, Landry M, Grubaugh N, van Dijk D, Foxman E. Nasal host response-based screening for undiagnosed respiratory viruses: a pathogen surveillance and detection study. The Lancet Microbe 2023, 4: e38-e46. PMID: 36586415, PMCID: PMC9835789, DOI: 10.1016/s2666-5247(22)00296-8.
- Escamilla-Rivera V, Santhanakrishnan M, Liu J, Gibb DR, Forsmo JE, Foxman EF, Eisenbarth SC, Luckey CJ, Zimring JC, Hudson KE, Stowell SR, Hendrickson JE. Complement Plays a Critical Role in Inflammation-Induced Immunoprophylaxis Failure in Mice. Frontiers In Immunology 2021, 12: 704072. PMID: 34249009, PMCID: PMC8270673, DOI: 10.3389/fimmu.2021.704072.
- Cheemarla NR, Watkins TA, Mihaylova VT, Wang B, Zhao D, Wang G, Landry ML, Foxman EF. Dynamic innate immune response determines susceptibility to SARS-CoV-2 infection and early replication kinetics. Journal Of Experimental Medicine 2021, 218: e20210583. PMID: 34128960, PMCID: PMC8210587, DOI: 10.1084/jem.20210583.
- Ravindra NG, Alfajaro MM, Gasque V, Huston NC, Wan H, Szigeti-Buck K, Yasumoto Y, Greaney AM, Habet V, Chow RD, Chen JS, Wei J, Filler RB, Wang B, Wang G, Niklason LE, Montgomery RR, Eisenbarth SC, Chen S, Williams A, Iwasaki A, Horvath TL, Foxman EF, Pierce RW, Pyle AM, van Dijk D, Wilen CB. Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes. PLOS Biology 2021, 19: e3001143. PMID: 33730024, PMCID: PMC8007021, DOI: 10.1371/journal.pbio.3001143.
- Cheemarla NR, Watkins TA, Mihaylova VT, Wang B, Zhao D, Wang G, Landry ML, Foxman EF. Magnitude and timing of the antiviral response determine SARS-CoV-2 replication early in infection. MedRxiv : The Preprint Server For Health Sciences 2021 PMID: 33532783, PMCID: PMC7852233, DOI: 10.1101/2021.01.22.21249812.
- Wu A, Mihaylova VT, Landry ML, Foxman EF. Viral interference cannot be concluded from datasets containing only symptomatic patients – Authors' reply. The Lancet Microbe 2021, 2: e10. PMID: 35544223, DOI: 10.1016/s2666-5247(20)30218-4.
- D’Mello A, Riegler AN, Martínez E, Beno SM, Ricketts TD, Foxman EF, Orihuela CJ, Tettelin H. An in vivo atlas of host–pathogen transcriptomes during Streptococcus pneumoniae colonization and disease. Proceedings Of The National Academy Of Sciences Of The United States Of America 2020, 117: 33507-33518. PMID: 33318198, PMCID: PMC7777036, DOI: 10.1073/pnas.2010428117.
- Wu A, Mihaylova VT, Landry ML, Foxman EF. Interference between rhinovirus and influenza A virus: a clinical data analysis and experimental infection study. The Lancet Microbe 2020, 1: e254-e262. PMID: 33103132, PMCID: PMC7580833, DOI: 10.1016/s2666-5247(20)30114-2.
- Ravindra NG, Alfajaro MM, Gasque V, Habet V, Wei J, Filler RB, Huston NC, Wan H, Szigeti-Buck K, Wang B, Wang G, Montgomery RR, Eisenbarth SC, Williams A, Pyle AM, Iwasaki A, Horvath TL, Foxman EF, Pierce RW, van Dijk D, Wilen CB. Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium. BioRxiv : The Preprint Server For Biology 2020 PMID: 32511382, PMCID: PMC7263511, DOI: 10.1101/2020.05.06.081695.
- Vogels CBF, Brito AF, Wyllie AL, Fauver JR, Ott IM, Kalinich CC, Petrone ME, Casanovas-Massana A, Catherine Muenker M, Moore AJ, Klein J, Lu P, Lu-Culligan A, Jiang X, Kim DJ, Kudo E, Mao T, Moriyama M, Oh JE, Park A, Silva J, Song E, Takahashi T, Taura M, Tokuyama M, Venkataraman A, Weizman OE, Wong P, Yang Y, Cheemarla NR, White EB, Lapidus S, Earnest R, Geng B, Vijayakumar P, Odio C, Fournier J, Bermejo S, Farhadian S, Dela Cruz CS, Iwasaki A, Ko AI, Landry ML, Foxman EF, Grubaugh ND. Analytical sensitivity and efficiency comparisons of SARS-CoV-2 RT–qPCR primer–probe sets. Nature Microbiology 2020, 5: 1299-1305. PMID: 32651556, PMCID: PMC9241364, DOI: 10.1038/s41564-020-0761-6.
- Wasik B, Wasik B, Foxman E, Iwasaki A, Turner P. Experimental Evolution of Human Rhinovirus Strains Adapting to Mouse Cells. 2020, 145-157. DOI: 10.1007/978-3-030-39831-6_12.
- Host response-based screening to identify undiagnosed cases of COVID-19 and expand testing capacity.Cheemarla NR, Brito AF, Fauver JR, Alpert T, Vogels CBF, Omer SB, Ko A, Grubaugh ND, Landry ML, Foxman EF. Host response-based screening to identify undiagnosed cases of COVID-19 and expand testing capacity. MedRxiv : The Preprint Server For Health Sciences 2020 PMID: 32577694, PMCID: PMC7302303, DOI: 10.1101/2020.06.04.20109306.
- Escamilla-Rivera V, Liu J, Gibb DR, Santhanakrishnan M, Liu D, Forsmo JE, Eisenbarth S, Foxman EF, Stowell SR, Luckey CJ, Zimring JC, Hudson KE, Hendrickson J. Poly(I:C) causes failure of immunoprophylaxis to red blood cells expressing the KEL glycoprotein in mice. Blood 2020, 135: 1983-1993. PMID: 32266378, PMCID: PMC7256361, DOI: 10.1182/blood.2020005018.
- Fauver JR, Petrone ME, Hodcroft EB, Shioda K, Ehrlich HY, Watts AG, Vogels CBF, Brito AF, Alpert T, Muyombwe A, Razeq J, Downing R, Cheemarla NR, Wyllie AL, Kalinich CC, Ott IM, Quick J, Loman NJ, Neugebauer KM, Greninger AL, Jerome KR, Roychoudhury P, Xie H, Shrestha L, Huang ML, Pitzer VE, Iwasaki A, Omer SB, Khan K, Bogoch II, Martinello RA, Foxman EF, Landry ML, Neher RA, Ko AI, Grubaugh ND. Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States. Cell 2020, 181: 990-996.e5. PMID: 32386545, PMCID: PMC7204677, DOI: 10.1016/j.cell.2020.04.021.
- Fauver JR, Petrone ME, Hodcroft EB, Shioda K, Ehrlich HY, Watts AG, Vogels CBF, Brito AF, Alpert T, Muyombwe A, Razeq J, Downing R, Cheemarla NR, Wyllie AL, Kalinich CC, Ott I, Quick J, Loman NJ, Neugebauer KM, Greninger AL, Jerome KR, Roychoundhury P, Xie H, Shrestha L, Huang ML, Pitzer VE, Iwasaki A, Omer SB, Khan K, Bogoch I, Martinello RA, Foxman EF, Landry ML, Neher RA, Ko AI, Grubaugh ND. Coast-to-coast spread of SARS-CoV-2 in the United States revealed by genomic epidemiology. MedRxiv : The Preprint Server For Health Sciences 2020 PMID: 32511630, PMCID: PMC7276058, DOI: 10.1101/2020.03.25.20043828.
- Mihaylova VT, Kong Y, Fedorova O, Sharma L, Dela Cruz CS, Pyle AM, Iwasaki A, Foxman EF. Regional Differences in Airway Epithelial Cells Reveal Tradeoff between Defense against Oxidative Stress and Defense against Rhinovirus. Cell Reports 2018, 24: 3000-3007.e3. PMID: 30208323, PMCID: PMC6190718, DOI: 10.1016/j.celrep.2018.08.033.
- Landry ML, Foxman EF. Antiviral Response in the Nasopharynx Identifies Patients With Respiratory Virus Infection. The Journal Of Infectious Diseases 2017, 217: 897-905. PMID: 29281100, PMCID: PMC5853594, DOI: 10.1093/infdis/jix648.
- Iwasaki A, Foxman EF, Molony RD. Early local immune defences in the respiratory tract. Nature Reviews Immunology 2016, 17: 7-20. PMID: 27890913, PMCID: PMC5480291, DOI: 10.1038/nri.2016.117.
- Foxman EF, Storer JA, Vanaja K, Levchenko A, Iwasaki A. Two interferon-independent double-stranded RNA-induced host defense strategies suppress the common cold virus at warm temperature. Proceedings Of The National Academy Of Sciences Of The United States Of America 2016, 113: 8496-8501. PMID: 27402752, PMCID: PMC4968739, DOI: 10.1073/pnas.1601942113.
- Foxman EF, Storer JA, Fitzgerald ME, Wasik BR, Hou L, Zhao H, Turner PE, Pyle AM, Iwasaki A. Temperature-dependent innate defense against the common cold virus limits viral replication at warm temperature in mouse airway cells. Proceedings Of The National Academy Of Sciences Of The United States Of America 2015, 112: 827-832. PMID: 25561542, PMCID: PMC4311828, DOI: 10.1073/pnas.1411030112.
- Foxman EF, Iwasaki A. Genome–virome interactions: examining the role of common viral infections in complex disease. Nature Reviews Microbiology 2011, 9: 254-264. PMID: 21407242, PMCID: PMC3678363, DOI: 10.1038/nrmicro2541.
- Foxman EF, Jarolim P. Use of the Fetal Fibronectin Test in Decisions to Admit to Hospital for Preterm Labor. Clinical Chemistry 2004, 50: 663-665. PMID: 14981040, DOI: 10.1373/clinchem.2003.028720.
- Cover Illustration: Histoplasma capsulatumFoxman EF. Cover Illustration: Histoplasma capsulatum, July 2004-June 2005. Journal of clinical microbiology. 2004; 42.
- Foxman EF, Zhang M, Hurst SD, Muchamuel T, Shen D, Wawrousek EF, Chan CC, Gery I. Inflammatory Mediators in Uveitis: Differential Induction of Cytokines and Chemokines in Th1- Versus Th2-Mediated Ocular Inflammation. The Journal Of Immunology 2002, 168: 2483-2492. PMID: 11859142, DOI: 10.4049/jimmunol.168.5.2483.
- Foxman E, Kunkel E, Butcher E. Integrating Conflicting Chemotactic Signals. Journal Of Cell Biology 1999, 147: 577-588. PMID: 10545501, PMCID: PMC2151176, DOI: 10.1083/jcb.147.3.577.
- Zigmond S, Foxman E, Segall J. Chemotaxis Assays for Eukaryotic Cells. Current Protocols In Cell Biology 1998, 00: 12.1.1-12.1.29. PMID: 18228315, DOI: 10.1002/0471143030.cb1201s00.
- Foxman E, Campbell J, Butcher E. Multistep Navigation and the Combinatorial Control of Leukocyte Chemotaxis. Journal Of Cell Biology 1997, 139: 1349-1360. PMID: 9382879, PMCID: PMC2140208, DOI: 10.1083/jcb.139.5.1349.
- Campbell J, Foxman E, Butcher E. Chemoattractant receptor cross talk as a regulatory mechanism in leukocyte adhesion and migration. European Journal Of Immunology 1997, 27: 2571-2578. PMID: 9368612, DOI: 10.1002/eji.1830271016.
- Flescher EG, Madden K, Snyder M. Components required for cytokinesis are important for bud site selection in yeast. The Journal Of Cell Biology 1993, 122: 373-86. PMID: 8320260, PMCID: PMC2119637, DOI: 10.1083/jcb.122.2.373.
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